Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq25183 158 1e-32 seq22976 140 4e-27 seq12129 122 1e-21 seq25171 120 4e-21 seq12986 98.7 1e-14 seq6891 98.7 1e-14 >seq25183 Length=17108971 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | || |||||||| ||||||||||| || | | || Sbjct 8363289 GCTTGGCCAGCTCACCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGAGAGGTGA 8363230 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| ||||| ||| ||| || | ||||||| |||| | Sbjct 8363229 TGGTGGAACGCTTGTTGTAGTGTGCCAGGCGGGAGGCTTCACCGGCGATGCGCTCGAAGA 8363170 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 8363169 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 8363110 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 8363109 GCACCTGCTTCAGCACCTTGTA 8363088 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||||||||| || | || Sbjct 8326114 GCTTGGCCAGCTCACCCGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGAGAAGTGA 8326173 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| ||||| ||| ||| || | ||||||| |||| | Sbjct 8326174 TGGTGGAACGCTTGTTGTAGTGTGCCAGGCGGGAGGCTTCACCGGCGATGCGCTCGAAGA 8326233 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 8326234 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 8326293 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 8326294 GCACCTGCTTCAGCACCTTGTA 8326315 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||||||||| || | || Sbjct 8350331 GCTTGGCCAGCTCACCAGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGAGAAGTGA 8350272 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| ||||| ||| ||| || | ||||||| |||| | Sbjct 8350271 TGGTGGAACGCTTGTTGTAGTGTGCCAGGCGGGAGGCTTCACCGGCGATGCGCTCGAAGA 8350212 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 8350211 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 8350152 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||| ||||| Sbjct 8350151 GCACCTGCTTCAGCACTTTGTA 8350130 Score = 143 bits (158), Expect = 3e-28 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||||| || ||||||||||| || | ||| | Sbjct 8443395 TGGCCAGCTCACCGGGCAGCAGGAGGCGCACAGCCGTCTGGATCTCCCGAGAAGTGATGG 8443336 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| ||| |||||| || |||||| ||||| |||| |||| Sbjct 8443335 TGGAGCGCTTGTTGTAGTACGCCAGGCGCGATGCCTCGCCAGTAATGCGCTCGAAAATGT 8443276 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||||||||| |||||||||| ||| | |||| |||||| ||| ||||||||||| Sbjct 8443275 CGTTGACAAATGAGTTCATGATGTCCATAGCCTTGGACGAGATGGCCATGTCGGGGTGCA 8443216 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| ||||||||||| Sbjct 8443215 CCTGCTTCAGCACCTTGTA 8443197 Score = 113 bits (124), Expect = 6e-19 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||||||||| || | || Sbjct 8370694 GCTTGGCCAGCTCTCCCGGCAGCAAGAGCCGCACGGCCGTCTGGATCTCCCGAGAAGTGA 8370635 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| || | || ||| ||| ||||||| |||| | Sbjct 8370634 TGGTGGAACGCTTGTTGTAGTGTGCTAAGCGCGAGGCTTCGCCAGCGATGCGCTCGAAGA 8370575 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| || || || |||||||| Sbjct 8370574 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGATGAAATACCAGTGTCGGGGT 8370515 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| || |||||||| Sbjct 8370514 GCACCTGCTTCAGTACCTTGTA 8370493 Score = 102 bits (112), Expect = 1e-15 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || || ||| | ||||| || || || |||||||| || | ||| | Sbjct 8450709 TGGCCAGCTCACCAGGCAACAGGAGGCGTACAGCCGTTTGGATCTCCCGGGAAGTGATGG 8450650 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| ||||||||| || ||| ||| | | || || || | || | Sbjct 8450649 TGGAGCGCTTGTTGTAGTGCGCCAAGCGCGAGGCTTCGCCGGCAATCCGCTCAAAAATAT 8450590 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| || || || ||||||| ||| | |||| |||||||||| ||| || |||| Sbjct 8450589 CGTTAACGAAGGAATTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCAGGATGCA 8450530 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| | ||||||||| Sbjct 8450529 CCTGCTTCAACACCTTGTA 8450511 >seq22976 Length=1419 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || | |||||| ||||||||||| || | | || Sbjct 683 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCTCACGGCCGTCTGGATCTCCCGAGAGGTGA 742 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| ||||||||| || || ||| | ||||||| |||| | Sbjct 743 TGGTGGAGCGCTTGTTGTAGTGCGCCAAGCGCGACGCTTCGCCGGCGATGCGCTCGAAGA 802 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 803 TGTCGTTGACGAAGGAGTTCATGATGCCCATAGCCTTGGAGGAGATGCCGGTGTCCGGGT 862 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| | ||||||||| Sbjct 863 GAACCTGCTTCAACACCTTGTA 884 >seq12129 Length=2875 Score = 122 bits (134), Expect = 1e-21 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || ||| | |||||||| || ||||||||||| || | || Sbjct 1055 GCTTGGCGAGCTCACCCGGCAGCAGGAGGCGCACAGCCGTCTGGATCTCCCGAGAAGTGA 996 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| ||||||||| || |||||| | ||||| |||| | Sbjct 995 TGGTGGAGCGCTTGTTGTAGTGCGCCAAGCGCGAGGCCTCACCAGCAATGCGCTCGAAGA 936 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | ||| ||| |||||| |||||| | Sbjct 935 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTAGAGGAAATGCCCGTGTCGGGAT 876 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 875 GCACCTGCTTCAGCACCTTGTA 854 >seq25171 Length=10573963 Score = 120 bits (132), Expect = 4e-21 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | ||||||||| || ||||||||||| || | | || Sbjct 8009149 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACTGCCGTCTGGATCTCCCGGGAGGTGA 8009208 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| ||| || || ||||||| || | | Sbjct 8009209 TGGTAGAGCGCTTGTTGTAATGGGCCAGGCGGGACGCTTCTCCAGCGATGCGCTCAAAGA 8009268 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 8009269 TGTCATTAACGAAGGAGTTCATGATGCCCATAGCCTTGGAGGAGATGCCGGTGTCGGGGT 8009328 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 8009329 GGACCTGCTTCAGCACCTTGTAGA 8009352 >seq12986 Length=1393 Score = 98.7 bits (108), Expect = 1e-14 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 ||||| || || || |||||| | | | || |||||||||||||||||| | || Sbjct 1089 ACGATTTCTGTACATAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 1030 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || ||| |||| |||||||||||| | ||||||||| |||||| | ||| | Sbjct 1029 CTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTCAGTCTGCGACTCGATG 970 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 ||||| |||||| ||| | || ||| || | ||| | ||||||| Sbjct 969 ATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACACGGCCCT 921 >seq6891 Length=1676 Score = 98.7 bits (108), Expect = 1e-14 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 507105 AGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 507164 ||||| ||||||||||||||||| | | || ||||| |||||||||||| || ||| Sbjct 1626 AGCGGCTCAAGGGCAAGGAGGGTCGTGTACGGGGCAACCTCATGGGCAAGCGGGTGGACT 1567 Query 507165 TTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGC 507224 | | ||| ||| | ||||||| |||||||||| | | | ||| ||| | ||||| |||| Sbjct 1566 TCAGCGCCCGCACAGTCATCACCCCCGACCCCAACCTGGCCATCGACCAAGTGGGGGTGC 1507 Query 507225 CC 507226 || Sbjct 1506 CC 1505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105070185212204