Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq25183 206 4e-47 seq22976 188 1e-41 seq25171 174 2e-37 seq12129 170 3e-36 seq6891 86.0 1e-10 >seq25183 Length=17108971 Score = 206 bits (228), Expect = 4e-47 Identities = 192/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 8363328 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACTGCGTGCTTGGCCAGCTCACCGGGCA 8363269 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| |||||||| | Sbjct 8363268 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGAGAGGTGATGGTGGAACGCTTGTTGTAGT 8363209 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || | ||||||| |||| ||||||||||| || ||||||| Sbjct 8363208 GTGCCAGGCGGGAGGCTTCACCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 8363149 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| |||||||||||||||||| |||||||||| Sbjct 8363148 TGATGCTCATGGCCTTGGAGGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 8363089 Query 1485710 AAAC 1485713 | || Sbjct 8363088 ACAC 8363085 Score = 196 bits (216), Expect = 8e-44 Identities = 197/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||| |||||||||||||| ||||| |||||| ||||||| || || ||| Sbjct 8350370 TGTACTTAGTGACAGCCTTGGTACCCTCAGAGACTGCGTGCTTGGCCAGCTCACCAGGCA 8350311 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | ||| ||| |||||||| | Sbjct 8350310 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGAGAAGTGATGGTGGAACGCTTGTTGTAGT 8350251 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || | ||||||| |||| ||||||||||| || ||||||| Sbjct 8350250 GTGCCAGGCGGGAGGCTTCACCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 8350191 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| |||||||||||||||||| ||||| |||| Sbjct 8350190 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACTTTGT 8350131 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 8350130 ACACATAGATGGAGTA 8350115 Score = 188 bits (208), Expect = 1e-41 Identities = 188/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||||| ||||| || || ||||||| || ||| ||| Sbjct 8443437 TGTACTTGGTGACGGCCTTGGTACCCTGGGAGACTGCATGTTTGGCCAGCTCACCGGGCA 8443378 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||| || ||||||||||| || | ||| ||| ||||||||| | Sbjct 8443377 GCAGGAGGCGCACAGCCGTCTGGATCTCCCGAGAAGTGATGGTGGAGCGCTTGTTGTAGT 8443318 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||| |||||| ||||| |||| |||||||||||||| ||||||| Sbjct 8443317 ACGCCAGGCGCGATGCCTCGCCAGTAATGCGCTCGAAAATGTCGTTGACAAATGAGTTCA 8443258 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| ||| |||||||||||||||||| |||||||||| Sbjct 8443257 TGATGTCCATAGCCTTGGACGAGATGGCCATGTCGGGGTGCACCTGCTTCAGCACCTTGT 8443198 Query 1485710 AAAC 1485713 | || Sbjct 8443197 ACAC 8443194 Score = 179 bits (198), Expect = 6e-39 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || || || || |||||||| ||||| ||||| |||||| ||||||| || || ||| Sbjct 8326077 TATTTAGTTACAGCCTTGGTGCCCTCAGAGACTGCGTGCTTGGCCAGCTCACCCGGCAGC 8326136 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || |||||||| ||||||||||| || | ||| ||| |||||||| | | Sbjct 8326137 AGGAGCCGCACGGCCGTCTGGATCTCCCGAGAAGTGATGGTGGAACGCTTGTTGTAGTGT 8326196 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||||||| ||| || | ||||||| |||| ||||||||||| || ||||||||| Sbjct 8326197 GCCAGGCGGGAGGCTTCACCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATG 8326256 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| |||||||||| |||||||||||||||||| ||||||||||| Sbjct 8326257 ATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTAC 8326316 Query 1485712 AC 1485713 || Sbjct 8326317 AC 8326318 Score = 161 bits (178), Expect = 2e-33 Identities = 182/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || || ||| Sbjct 8370733 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACTGCGTGCTTGGCCAGCTCTCCCGGCA 8370674 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | ||| ||| |||||||| | Sbjct 8370673 GCAAGAGCCGCACGGCCGTCTGGATCTCCCGAGAAGTGATGGTGGAACGCTTGTTGTAGT 8370614 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || | ||| ||| ||| ||||||| |||| ||||||||||| || ||||||| Sbjct 8370613 GTGCTAAGCGCGAGGCTTCGCCAGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 8370554 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| || || || |||||||||||||||||| || ||||||| Sbjct 8370553 TGATGCCCATGGCCTTGGATGAAATACCAGTGTCGGGGTGCACCTGCTTCAGTACCTTGT 8370494 Query 1485710 AAAC 1485713 | || Sbjct 8370493 ACAC 8370490 Score = 145 bits (160), Expect = 1e-28 Identities = 181/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| |||||||| ||||| ||||| ||||||| || || ||| Sbjct 8450751 TGTACTTAGTAACTGCCTTAGTACCCTCGGAGACTGCGTGTTTGGCCAGCTCACCAGGCA 8450692 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| || || || |||||||| |||| ||| ||| ||||||||| | Sbjct 8450691 ACAGGAGGCGTACAGCCGTTTGGATCTCCCGGGAAGTGATGGTGGAGCGCTTGTTGTAGT 8450632 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| ||| ||| ||| | | || || || | || ||||| || || || |||| Sbjct 8450631 GCGCCAAGCGCGAGGCTTCGCCGGCAATCCGCTCAAAAATATCGTTAACGAAGGAATTCA 8450572 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| ||| || ||||||||||| | |||||||| Sbjct 8450571 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCAGGATGCACCTGCTTCAACACCTTGT 8450512 Query 1485710 AAACAAAG 1485717 | ||| || Sbjct 8450511 ACACATAG 8450504 >seq22976 Length=1419 Score = 188 bits (208), Expect = 1e-41 Identities = 204/269 (76%), Gaps = 1/269 (0%) Strand=Plus/Plus Query 1485446 CCGCGGCGGCGTTGATGGCATC-GTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACG 1485504 ||||||| ||||| | | | | | |||| |||||||| |||||||| ||||| || ||| Sbjct 619 CCGCGGCCGCGTTACTTGGAGCTGGTGTATTTGGTGACCGCCTTGGTGCCCTCGGACACG 678 Query 1485505 GCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTG 1485564 |||||| ||||||| |||||| ||| | || | |||||| ||||||||||| || | | Sbjct 679 GCGTGCTTGGCCAGCTCGCCGGGCAGCAGGAGCCTCACGGCCGTCTGGATCTCCCGAGAG 738 Query 1485565 CCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCG 1485624 ||| ||| ||||||||| | |||||| ||| || ||| | ||||||| ||| Sbjct 739 GTGATGGTGGAGCGCTTGTTGTAGTGCGCCAAGCGCGACGCTTCGCCGGCGATGCGCTCG 798 Query 1485625 ATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCG 1485684 | ||||||||||| || ||||||||||| ||| | ||| ||||||||| ||| Sbjct 799 AAGATGTCGTTGACGAAGGAGTTCATGATGCCCATAGCCTTGGAGGAGATGCCGGTGTCC 858 Query 1485685 GGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 ||||| |||||||| | ||||||||| || Sbjct 859 GGGTGAACCTGCTTCAACACCTTGTACAC 887 >seq25171 Length=10573963 Score = 174 bits (192), Expect = 2e-37 Identities = 192/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || || | | Sbjct 8009110 TGTACTTGGTGACAGCCTTGGTGCCCTCCGAGACAGCGTGCTTGGCCAGCTCTCCTGGGA 8009169 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||||||||| |||| | ||| || ||||||||| Sbjct 8009170 GCAGCAGGCGCACTGCCGTCTGGATCTCCCGGGAGGTGATGGTAGAGCGCTTGTTGTAAT 8009229 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| || || ||||||| || | ||||| || || || ||||||| Sbjct 8009230 GGGCCAGGCGGGACGCTTCTCCAGCGATGCGCTCAAAGATGTCATTAACGAAGGAGTTCA 8009289 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 8009290 TGATGCCCATAGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 8009349 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 8009350 AGACATAGATGGAGTA 8009365 >seq12129 Length=2875 Score = 170 bits (188), Expect = 3e-36 Identities = 184/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||||||||| || ||||| ||| |||| || || || ||| Sbjct 1094 TGTACTTGGTAACGGCCTTGGTACCCTCGGAAACGGCATGCTTGGCGAGCTCACCCGGCA 1035 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||| || ||||||||||| || | ||| ||| ||||||||| | Sbjct 1034 GCAGGAGGCGCACAGCCGTCTGGATCTCCCGAGAAGTGATGGTGGAGCGCTTGTTGTAGT 975 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| ||| |||||| | ||||| |||| |||||||| || || ||||||| Sbjct 974 GCGCCAAGCGCGAGGCCTCACCAGCAATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 915 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||| |||||| |||||| ||||||||||| |||||||||| Sbjct 914 TGATGCCCATGGCCTTAGAGGAAATGCCCGTGTCGGGATGCACCTGCTTCAGCACCTTGT 855 Query 1485710 AAAC 1485713 | || Sbjct 854 ACAC 851 >seq6891 Length=1676 Score = 86.0 bits (94), Expect = 1e-10 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 429061 AGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 429120 |||| |||||||||||||||| || | || ||||| |||||||||||| || ||| Sbjct 1626 AGCGGCTCAAGGGCAAGGAGGGTCGTGTACGGGGCAACCTCATGGGCAAGCGGGTGGACT 1567 Query 429121 TTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGTGC 429180 | | || ||| | ||||||| ||||||||| | | | ||| ||| | ||||| |||| Sbjct 1566 TCAGCGCCCGCACAGTCATCACCCCCGACCCCAACCTGGCCATCGACCAAGTGGGGGTGC 1507 Query 429181 CC 429182 || Sbjct 1506 CC 1505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913564484568068