Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq25179 158 9e-33 seq25024 98.7 7e-15 seq25035 96.9 3e-14 >seq25179 Length=14121063 Score = 158 bits (174), Expect = 9e-33 Identities = 908/1437 (63%), Gaps = 26/1437 (2%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||| | ||||| ||||||||||||||||| | |||||| ||||| || || || ||||| Sbjct 11466672 GCACTGACATTCAGAATACCATTGGCATCGATATCAAAAGTGACCTCGATCTGGGGGACT 11466731 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | || || ||||| || | | ||| | ||||| || || || || Sbjct 11466732 CCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCTTT 11466791 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGA-TAGTA-ACTACAGTTTGATTATCTGAAT 281603 || | | ||||||||| | | |||| || | ||| | | || || ||||||| Sbjct 11466792 GTCATAGCCCTTTCACCCTCATATACCTGGACCAGGACACTGC--TCTGGTTGTCTGAAT 11466849 Query 281604 AAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || |||| | || ||| ||||| || ||||| | | || | | Sbjct 11466850 AGGTGGTGAA-GGTCTGAGTTTGTTTGGTGGGAATAGTGGTGTTGCGCTTGATGAGAGCA 11466908 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||||||||| || | || || || || || |||||||| | || | Sbjct 11466909 GTCATCACTCCACCAGCTGTCTCAATGCCCAGGGACAGGGGGGTGACATCCAACAGCAGC 11466968 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || || | || ||| | | || | |||||||||||||| | |||||||| Sbjct 11466969 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGAATAGCTGCTTGCACTGCAGCACCG 11467028 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-T 281841 || |||||||| |||||||| || | | | || || | ||| |||||||| || | Sbjct 11467029 TAAGCAACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 11467088 Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 || || | || | | ||| || ||||||| || || || || | ||||| || || Sbjct 11467089 TGTAACAGCTTCT-GGATCTTGGGGATACGAGTAGAGCCACCCACCAGCACAATCTCTTG 11467147 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 | ||| || || || || | ||| | | | || || || || || || | Sbjct 11467148 GATCTGGCCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACTGGCTCCAGGGTGCC 11467207 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 282021 | || | |||| | || || || || || | |||| || | | | || Sbjct 11467208 ACGGAAAAGATCTGCATTGAGCTCCTCAAAGCGGGCACGGGTAATAGAGGTGTAGAAGTC 11467267 Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 282081 ||| || ||||| | || |||| ||||| ||| ||| || ||||| || | || Sbjct 11467268 AATACCCTCGAAAAGGGAGTCAATCTCAATGCTAGCTTGTGTGGAAGAGCTGAGGGTGCG 11467327 Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAA 282139 || || | ||||| || || | || | | | || ||| ||| | | Sbjct 11467328 CTTTGCCCTCTCACAAGCCGTACGCAGCCGCCTCACCGC--GCGCTTGTTGCCAGCAATG 11467385 Query 282140 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAA 282197 || || | || | |||||| ||||| |||| ||| | || | ||| || |||| Sbjct 11467386 TCACGCTTGTGCTTACGCTTGAATTCTTC--CACAAAATGGTTCACCATACGGTTGTCAA 11467443 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || || || |||| | || | || | || | | |||| || | |||||| | Sbjct 11467444 AGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACTTCAAAGATTCCATCCT 11467503 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| || | | | |||||| || || || |||| ||||| || || |||||| Sbjct 11467504 CAATAGTAAGGATGGACACATCAAAAGTACCCCCTCCCAAGTCAAAGATGAGCACATTCT 11467563 Query 282318 TTTCTTTGTCTTG------GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 | || || | || || || |||||||| || | |||||| || || || | Sbjct 11467564 TCTCACCAGCTCGAGTACCTTTCTTGTCCAGACCATAGGCTATAGCAGCTGCTGTGGGCT 11467623 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 |||| ||||| | || ||||||||||||| || | || |||||||| || || || | Sbjct 11467624 CATTGATAATACGCATCACATTAAGACCAGTGATGGTGCCAGCATCTTTGGTAGCCTGGC 11467683 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTCCA 282490 || || || || || || ||||| || ||||| || ||| |||| |||| || Sbjct 11467684 GCTGGGAGTCATTGAAGTAAGCAGGCACTGTAATGACAGCATTCTG-CACTTTGCGCCCC 11467742 Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA 282550 | ||| || || | | ||||| || ||| | ||| || || | ||||| Sbjct 11467743 AGATAGGCCTCAGCAATCTCCTTCATCTTGGTTAGGACCATAGAGCTGATCTCCTCTGG- 11467801 Query 282551 GAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 282609 ||| | | ||| ||| || || |||| | | || || || |||| Sbjct 11467802 GAAGAAAGTCTTCATCTCACCTTTGTACTCCACTTGCACCTTGGGCTTGCCACTGTCATT 11467861 Query 282610 AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 282669 | || || ||||| | |||||||| || || || | |||||| | | | | Sbjct 11467862 CACCACACGGAAGGGCCAGTGCTTCATATCCGACTGCACCGTGGGGTCATCATACTTGCG 11467921 Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 || || | ||||| |||||||| || || ||||| || || | || | || | || Sbjct 11467922 GCCGATGAGACGTTTAGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACCTGGTTCTT 11467981 Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789 ||||||||| ||||| || | ||||| || || || | ||||| || || || || Sbjct 11467982 GGCTGCATCACCAATGAGGCGCTCTGTATCAGTGAAGGCCACATAGCTGGGTGTGGTTCG 11468041 Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 || ||||| || || || || || || ||||| |||| || | ||||| || || Sbjct 11468042 GTTCCCTTGGTCGTTAGCGATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCA 11468098 >seq25024 Length=1579651 Score = 98.7 bits (108), Expect = 7e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282698 GTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC 282757 |||||||||||||| | |||| |||| | || || ||||| || |||| ||||| Sbjct 1095776 GTATTGGTTGGATTCATTGCAACTTGGTTCTTTGCGGCATCGCCGATCAACCTCTCTGTA 1095717 Query 282758 TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCA 282817 ||||| || | || || |||||| || | ||||| |||||||| ||||| ||||| Sbjct 1095716 TCTGTGAAGGCCACGTAGCTTGGAGTGGTCCTGTTACCCTGATCATTGGCAATGATTTCC 1095657 Query 282818 ACTTTACCATTTTGCCATACACCTACACA 282846 || || |||| ||| ||||||| ||||| Sbjct 1095656 ACCTTCCCATGTTGGAATACACCAACACA 1095628 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||| | |||| |||||| || || ||||||||||| | |||||| || |||||||| Sbjct 1098345 TTATCCACAGCAGACACATTCAGGATGCCATTGGCATCAATATCAAAGGTTACTTCAATC 1098286 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCC 281508 ||||| || ||||| ||||||| ||||| || Sbjct 1098285 TGAGGTACACCTCTGGGAGCAGGGGGGATACC 1098254 >seq25035 Length=2404758 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| ||| | || ||||| ||||| || |||||| | ||| | | | ||||| Sbjct 84080 TGTTGTAGCTACAGTGGCGTTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 84021 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || || ||| | || ||| ||||| ||||||||||| ||||| ||||| Sbjct 84020 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTACCAAGAAATTGGGAGAGCTGGTCG 83961 Query 131296 TGATGG 131301 |||||| Sbjct 83960 TGATGG 83955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739392597345912