Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq25033 158 2e-33 seq25193 123 5e-23 >seq25033 Length=1520908 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| |||||| || | || || || ||||| ||||| || || || ||||| Sbjct 769877 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 769818 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||| ||||| | || || || ||||| || Sbjct 769817 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGA 769758 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||| || ||||| || || ||||| ||||| || ||| | || || || Sbjct 769757 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 769698 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || ||||||||||||| ||||| ||||| |||||||| Sbjct 769697 TCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 769651 Score = 123 bits (136), Expect = 5e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| |||||||||||||||||||| ||||| || || || || || ||| | | || Sbjct 769637 CGCAGCACTAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCA 769578 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| | ||| || || ||||| || || |||||||| Sbjct 769577 TCCTCCAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCTGGCGGAATGCCTTCCTTG 769518 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 || || ||||| || || ||||| || || || ||| | || || || |||| ||| Sbjct 769517 TCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGT 769462 >seq25193 Length=27607347 Score = 123 bits (136), Expect = 5e-23 Identities = 125/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| ||| | |||||||| || ||||| || ||||| || || ||||| Sbjct 4736278 GCTTTATGGTGGTATTATGTCTCTAAAGGAATCGAATATTTGGATACAGTATTCTTCATC 4736337 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || ||||| || ||||||| | || || ||||| |||||||| ||||| Sbjct 4736338 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTTACCATGTTC 4736397 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || || | ||| | || ||||| ||| |||| || || |||| Sbjct 4736398 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 4736440 Score = 96.9 bits (106), Expect = 7e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369 ||| ||||||||||||||| |||| | || || ||||| |||||||| | |||||||| Sbjct 4738671 AGCTTTTTTCGGAGCTCAGATGAACGCGTTTATTCATGTCATTATGTACATGTATTATGG 4738730 Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429 | || || ||||| |||| ||| |||| || | ||||||||||| || | || || Sbjct 4738731 ATTAGCTGCCTGTGGCCCTAAATTTCAAAAATACCTGTGGTGGAAGCGATACTTGACCAT 4738790 Query 60430 AATGCAATTGTTA 60442 | ||||| || || Sbjct 4738791 ACTGCAACTGGTA 4738803 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | |||| || || || || |||| ||||| || |||||||| || || Sbjct 4739284 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 4739343 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 || |||| || ||| || || | ||| |||| || || || || |||||||||||| Sbjct 4739344 AAGTGGATGCACTGGGGTGTAATTTTCTATGCTATCACCTTCATTTTCCTGTTTGGTAAC 4739403 Query 60563 TTCTATTTTAGAACATACAAGA 60584 ||||| | | | ||||| |||| Sbjct 4739404 TTCTACTATCGGACATATAAGA 4739425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981510041586868