Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq25033 122 8e-23 seq25086 91.5 1e-13 seq12986 91.5 1e-13 >seq25033 Length=1520908 Score = 122 bits (134), Expect = 8e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| || || ||| | || || ||||| Sbjct 770082 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 770023 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || |||| ||||||||| || || |||||||| ||||| |||||| Sbjct 770022 CTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTT 769963 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||||| ||||| ||||||| || || | ||||| ||| ||||| || Sbjct 769962 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGT 769903 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || ||||||||| Sbjct 769902 AAGGGTCTTGACAAAGATCTGCATG 769878 Score = 116 bits (128), Expect = 4e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || ||||| || || ||| | | | || || |||| Sbjct 769854 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCT 769796 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || | || ||||||||| || || |||||||| || || ||||| Sbjct 769795 GCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGGATCT 769736 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| |||||||||| || | |||| ||| ||||| | Sbjct 769735 TGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCTG 769676 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || || || ||||||||| Sbjct 769675 TCAGGGTCTTCACAAAGATCTGCATG 769650 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || ||||| ||| || ||| | | | ||||| ||||||||||| Sbjct 769619 GTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCA-TCCTCCAGCTGCTTGCC 769561 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | | ||||||||| || || |||||||||||||| |||||| ||| Sbjct 769560 AGCGAAGATCAATCTCTGCTGGTCTGGCGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 769501 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTC 133615 | | ||| | ||||| |||||||||| || Sbjct 769500 CACATTCTCGATGGTGTCACTGGGCTCCACCTC 769468 >seq25086 Length=707082 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| ||||| || | || || |||||||||||||| ||||| ||||| || ||| Sbjct 60503 TACTCCACGATTTCTGTACATAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTG 60562 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||| |||||||| | ||| ||||| |||||||| ||| ||| || || ||||| Sbjct 60563 CTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTCAGTCTGCG 60620 >seq12986 Length=1393 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| ||||| || | || || |||||||||||||| ||||| ||||| || ||| Sbjct 1095 TACTCCACGATTTCTGTACATAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTG 1036 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||| |||||||| | ||| ||||| |||||||| ||| ||| || || ||||| Sbjct 1035 CTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTCAGTCTGCG 978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483268449934880