Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq25130 134 2e-26 seq25211 123 3e-23 >seq25130 Length=4446784 Score = 134 bits (148), Expect = 2e-26 Identities = 383/579 (66%), Gaps = 15/579 (3%) Strand=Plus/Plus Query 176975 CACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAG 177034 ||| || ||||||| |||| | || | |||||| |||||||| ||||| || | || || Sbjct 3476561 CACATGTATGAAAGAGTCTGCTGGAATGTAATTCTCGTAATTTTCTCTGGAAGGGCCTAG 3476620 Query 177035 TACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCT 177094 ||| | ||||| | || |||| ||||| ||| ||||| || ||||| || || | Sbjct 3476621 TACAACTGGTACTGATCCAGCCAGAAGAGCATTGTAAAGTTTCTCAGTAATGTAATCTTT 3476680 Query 177095 GTGTACGGAGTTCTCAAACGCGAGATAGAATTTACA---GGAAGATAGTAGCGGGATGAA 177151 ||| | || || ||||| | || || ||||| || |||| ||||| | | || || Sbjct 3476681 GTGGATTGAATTTTCAAAGGAAAGGTAAAATTTGCAAGTGGAA-ATAGTTG--GAATCAA 3476737 Query 177152 GTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTT 177211 || | || | || ||||| | | | || || ||| || || |||| ||| Sbjct 3476738 GTTTTTGTCATTGACGTAGTCTCCGAAGGCTTGTCCATAGGTATGGATTTCAATGTATTT 3476797 Query 177212 ACTGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGCTGACGACCC 177270 || ||||| ||| || || || || |||| || |||||| || || || |||| Sbjct 3476798 GCTAAGCTCATTGTAATA-CTTGACTCGAGCGTGCTCAGGGTTCCAGTTACTTACAACCC 3476856 Query 177271 AGCAAACTAACTTGCTCTTTGCGGGAACGGGATTCGATACTAATGCAGTGTCT-CTGAGC 177329 |||| || || || ||| || || ||| | ||| | || | | | || | Sbjct 3476857 AGCAGACCAAGTTTTCCTTACTTGGCAC----TTCAAATGTAAAGGAGCTTGTACCGACC 3476912 Query 177330 GTTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTG 177389 | | | ||||| ||||| ||||||||||| || || | ||| || | || || || Sbjct 3476913 ATCATGAAGCCATAAGGCACCTGAATATCCGAATCACGCCGGTAAGTCAGGGTCAGGTTA 3476972 Query 177390 AAAAGGTTTTCTATACCT-TGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCA 177448 || |||| ||| || || | ||| || | | | | | || || || ||||||||||| Sbjct 3476973 AACAGGTGTTCAATGCCACTCTTTTGTGGAG-TATGAGTTGGAGACTCCAAGTTCATCCA 3477031 Query 177449 TATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTTAT 177508 |||||||| || || | ||| |||| || | ||||| || |||| || || Sbjct 3477032 AATCCACTTCTGGAATGGTGGCCTGGCTTGCTGAGGTAAGTTAGTCAGATCCCAGCTAAT 3477091 Query 177509 CTCTCTGTGGTGAAAGACTACGGCATTGGCTTTGTAATA 177547 || ||||| |||| || || |||| || ||||| ||| Sbjct 3477092 ATCCCTGTGATGAATGAGAACAGCATGGGATTTGTTATA 3477130 >seq25211 Length=34478284 Score = 123 bits (136), Expect = 3e-23 Identities = 236/343 (69%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 |||||||| | |||||||| |||| ||||| || || | |||||||| || || Sbjct 21605732 TTGGTCTTTATTGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTT 21605791 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 || ||| || || | | ||||| | || ||||| || | ||||| || || || Sbjct 21605792 CTTCTGTAGAGGTCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCATAT 21605851 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || ||||| ||| | | | | ||||||||| || ||||| || ||||| ||| || Sbjct 21605852 ACAACACTCTCTAACTGACTAGAAATAAAGACATTATCAAAACATGAGACTATTCCCCTC 21605911 Query 162835 ACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 || || || | || | || || ||||| | || || || | |||||| | |||| Sbjct 21605912 ACAGC-AGCAAAAAAAGATTCTGGAGA-CTTTC-TGTCAACATGAATGCAGTAAAAATTC 21605968 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 |||||||| ||||| | || || | ||| || | |||||| || || || | ||||| Sbjct 21605969 TGAGGGGCATAGATTGATCTTAGAAGTCTGTCAAGCATCTCAATTTTGTGATACACCACT 21606028 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || || || ||||| || || || || || || ||||||| Sbjct 21606029 ATTGAGTAAGCTATTGGAAATTCTGCTTCTTCATTGCTGAGAG 21606071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578249707155200