Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq25183 170 3e-36 seq22976 158 2e-32 seq25171 131 2e-24 seq12129 131 2e-24 seq12986 102 1e-15 seq6891 95.1 2e-13 seq25086 91.5 2e-12 >seq25183 Length=17108971 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| ||| |||| ||||| Sbjct 8363088 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 8363141 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | || ||| ||| Sbjct 8363142 AGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGTGAAGCCTCCCGC 8363201 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | | || ||||||||||| |||||||| Sbjct 8363202 CTGGCACACTACAACAAGCGTTCCACCATCACCTCTCGGGAGATCCAGACGGCCGTGCGG 8363261 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| |||||| |||||||||||||||| Sbjct 8363262 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCAGTCTCCGAGGGCACCA 8363310 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| ||| |||| ||||| Sbjct 8326315 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 8326262 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | || ||| ||| Sbjct 8326261 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGTGAAGCCTCCCGC 8326202 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | || ||||||||||| |||||||| Sbjct 8326201 CTGGCACACTACAACAAGCGTTCCACCATCACTTCTCGGGAGATCCAGACGGCCGTGCGG 8326142 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| |||||| ||||| |||||||||| Sbjct 8326141 CTCCTGCTGCCGGGTGAGCTGGCCAAGCACGCAGTCTCTGAGGGCACCA 8326093 Score = 149 bits (164), Expect = 9e-30 Identities = 171/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| ||||||||||||||| || || |||| ||| |||| ||||| Sbjct 8350130 TACAAAGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 8350183 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | || ||| ||| Sbjct 8350184 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGTGAAGCCTCCCGC 8350243 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | || ||||||||||| |||||||| Sbjct 8350244 CTGGCACACTACAACAAGCGTTCCACCATCACTTCTCGGGAGATCCAGACGGCCGTGCGG 8350303 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| |||||| ||||| ||||| |||| Sbjct 8350304 CTCCTGCTGCCTGGTGAGCTGGCCAAGCACGCAGTCTCTGAGGGTACCA 8350352 Score = 143 bits (158), Expect = 4e-28 Identities = 172/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || | | ||||||| || |||| | ||| Sbjct 8443197 TACAAGGTGCTGAAGCAGGTGCACCCC-GA--CAT--GGCCATC-TCGTCCAAGGCTATG 8443250 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| |||||||||||||| |||| ||||| |||||| ||| Sbjct 8443251 GACATCATGAACTCATTTGTCAACGACATTTTCGAGCGCATTACTGGCGAGGCATCGCGC 8443310 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| || |||||||||| ||| ||| | || ||||||||||| || |||||| Sbjct 8443311 CTGGCGTACTACAACAAGCGCTCCACCATCACTTCTCGGGAGATCCAGACGGCTGTGCGC 8443370 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| || || |||||| |||| |||| Sbjct 8443371 CTCCTGCTGCCCGGTGAGCTGGCCAAACATGCAGTCTCCCAGGGTACCA 8443419 Score = 140 bits (154), Expect = 5e-27 Identities = 168/229 (73%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| || ||||||||||||||| || | | ||||| ||| ||||| Sbjct 8370493 TACAAGGTACTGAAGCAGGTGCACCCCGACACTGGTATTTCATCC------AAGGCCATG 8370546 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| ||| ||| ||| Sbjct 8370547 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCTGGCGAAGCCTCGCGC 8370606 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 | || | || ||||||||| ||| ||| | || ||||||||||| |||||||| Sbjct 8370607 TTAGCACACTACAACAAGCGTTCCACCATCACTTCTCGGGAGATCCAGACGGCCGTGCGG 8370666 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| |||||| |||||||||||||||| Sbjct 8370667 CTCTTGCTGCCGGGAGAGCTGGCCAAGCACGCAGTCTCCGAGGGCACCA 8370715 Score = 109 bits (120), Expect = 8e-18 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||| | ||||||||||| || || || |||| ||| |||| ||||| Sbjct 8450511 TACAAGGTGTTGAAGCAGGTGCATCCTGACAC-----GGGCATC-TCCTCCAAGGCCATG 8450564 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| || || || ||||| || | || || || | | ||| ||| ||| Sbjct 8450565 GGCATCATGAATTCCTTCGTTAACGATATTTTTGAGCGGATTGCCGGCGAAGCCTCGCGC 8450624 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| || |||||||||| ||| ||| | || |||||||| || || || ||| Sbjct 8450625 TTGGCGCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAAACGGCTGTACGC 8450684 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || | ||| || || ||||||| ||||| ||||||||||| || Sbjct 8450685 CTCCTGTTGCCTGGTGAGCTGGCCAAACACGCAGTCTCCGAGGGTAC 8450731 >seq22976 Length=1419 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||| | |||||||| ||||| |||| |||| ||| |||| | ||| Sbjct 884 TACAAGGTGTTGAAGCAGGTTCACCCGGACACCGG-----CATC-TCCTCCAAGGCTATG 831 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||| || ||| Sbjct 830 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAAGCGTCGCGC 771 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| || |||||||||| ||| ||| | | || ||||||||||| |||||| | Sbjct 770 TTGGCGCACTACAACAAGCGCTCCACCATCACCTCTCGGGAGATCCAGACGGCCGTGAGG 711 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 710 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 662 >seq25171 Length=10573963 Score = 131 bits (144), Expect = 2e-24 Identities = 176/244 (72%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| |||||| |||| |||| Sbjct 8009365 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC- 8009312 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| | ||| ||||||||||| || || || ||||| | || ||||||| Sbjct 8009311 TCCTCCAAGGCTATGGGCATCATGAACTCCTTCGTTAATGACATCTTTGAGCGCATCGCT 8009252 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || || |||||||| | | |||||||||| || ||| | | || |||||| Sbjct 8009251 GGAGAAGCGTCCCGCCTGGCCCATTACAACAAGCGCTCTACCATCACCTCCCGGGAGATC 8009192 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| || ||||||||| | | | || || ||||||| |||||| ||||| |||||| Sbjct 8009191 CAGACGGCAGTGCGCCTGCTGCTCCCAGGAGAGCTGGCCAAGCACGCTGTCTCGGAGGGC 8009132 Query 725139 ACCA 725142 |||| Sbjct 8009131 ACCA 8009128 >seq12129 Length=2875 Score = 131 bits (144), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||| ||| || || ||| ||| ||| ||||| Sbjct 854 TACAAGGTGCTGAAGCAGGTGCATCCCGACAC-----GGGCATT-TCCTCTAAGGCCATG 907 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||| | |||||| ||| Sbjct 908 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATTGCTGGTGAGGCCTCGCGC 967 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| || |||||||||| ||| ||| | || ||||||||||| || |||||| Sbjct 968 TTGGCGCACTACAACAAGCGCTCCACCATCACTTCTCGGGAGATCCAGACGGCTGTGCGC 1027 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || || |||| ||| ||||| |||||||| |||| Sbjct 1028 CTCCTGCTGCCGGGTGAGCTCGCCAAGCATGCCGTTTCCGAGGGTACCA 1076 >seq12986 Length=1393 Score = 102 bits (112), Expect = 1e-15 Identities = 107/139 (77%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | | || | ||||||||||| ||||||||| ||||| Sbjct 953 CAGCTCTGGTACGCCATCATCGAGTCGCAGACTGAGACCGGCACACCCTACATGCTCTAC 1012 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGC--CA 262208 || ||| || |||| || ||||||||||||||||||||||||| || | || || Sbjct 1013 AAAGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCA--TCAAATGCAGCA 1070 Query 262209 ACCTGTGCACCGAGATCGT 262227 |||| || || || ||||| Sbjct 1071 ACCTATGTACAGAAATCGT 1089 >seq6891 Length=1676 Score = 95.1 bits (104), Expect = 2e-13 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1818122 GGGCACGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGT 1818181 |||||| ||||| | ||| ||| | | | |||||||||| ||||||| | ||| ||| | Sbjct 1505 GGGCACCCCCACTTGGTCGATGGCCAGGTTGGGGTCGGGGGTGATGACTGTGCGGGCGCT 1564 Query 1818182 AAAGTTGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCG 1818241 |||| || |||||||||||| ||||| || | | |||||||||||||||| ||| Sbjct 1565 GAAGTCCACCCGCTTGCCCATGAGGTTGCCCCGTACACGACCCTCCTTGCCCTTGAGCCG 1624 Query 1818242 CT 1818243 || Sbjct 1625 CT 1626 >seq25086 Length=707082 Score = 91.5 bits (100), Expect = 2e-12 Identities = 85/106 (80%), Gaps = 4/106 (4%) Strand=Plus/Minus Query 262124 GAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAG 262183 ||||||||||| ||||||||| ||||||| ||| || |||| || |||||||||||| Sbjct 60612 GAGACCGGCACACCCTACATGCTCTACAAAGACTCCTGCAACAGGAAGAGCAACCAGCAG 60553 Query 262184 AACCTGGGCACCACGACAGAGGC--CAACCTGTGCACCGAGATCGT 262227 ||||||||||||| || | || |||||| || || || ||||| Sbjct 60552 AACCTGGGCACCA--TCAAATGCAGCAACCTATGTACAGAAATCGT 60509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175379456260344