Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq9637 235 8e-57 seq25159 96.9 5e-15 >seq9637 Length=1534 Score = 235 bits (260), Expect = 8e-57 Identities = 589/885 (67%), Gaps = 25/885 (3%) Strand=Plus/Minus Query 146086 CCAAATTCCCATATCGTGTTTGTTCAATAGCTAAAGGAACGGACTTTCTTCGATTCGAAC 146145 |||| | ||| ||||| || ||||| || || | || ||||| || |||| || |||| Sbjct 1249 CCAAGTACCCCTATCGCGTGTGTTCCATGGCCCAGGGTACGGATCTTATTCGCTTTGAAC 1190 Query 146146 AAAACATCCAGTGTGAATCAT--TCAAGCCTACCAAAGACGATTTCGATGAGGGCATCAT 146203 || ||| || || | | | ||||| | ||| || || | || ||||||||||| Sbjct 1189 GTAATATC--GTCTGCACCCCGATGAAGCCCATCAATGAAGACCTGGACGAGGGCATCAT 1132 Query 146204 GGTGGTCTACAAGCGCGACATCCGTGCCCACACGTTCAAAGTGAATGTGTATCAGAAGGT 146263 |||||||||||| ||| ||||| || ||||| || || || || || |||||||| Sbjct 1131 GGTGGTCTACAAACGCAACATCGTCGCGCACACCTTTAAGGTACGGGTCTACCAGAAGGT 1072 Query 146264 TTTGACGCAACGTCAGAGTTACTCGTACATTTATATGAATTATATGCTGGGACAG-ACTG 146322 ||||||| |||| || ||| | ||||| | | | |||| ||||||| ||| | Sbjct 1071 TTTGACGTTTCGTCGTAGCTACGCTTACATCCACACCACTTATCTGCTGGG-CAGCAACA 1013 Query 146323 TGGAGCGTCTGCCTATTCCAATGTGGGAAGTGCATTATGTGAACAGAATTAACAG---GT 146379 ||| || | ||| |||||||| | ||| || | ||||| |||| || Sbjct 1012 CGGAATACGTGGCGCCTCCTATGTGGGAGATTCATCATATCAACAG---CCACAGTCAGT 956 Query 146380 GTTACAACTCTGTGAAGAGACATATAGCAGGCCAATGG--TACGAAGTGTACCATAAAGA 146437 | |||| ||| | | |||||||||| | || | || | ||| |||| || Sbjct 955 GCTACAGTTCTTACAGCCGCGTTATAGCAGGC--ACGGTTTTCGTGGCGTATCATAGGGA 898 Query 146438 CAGTTATGTAAATGAAAC---TATGCTTCTGCTGGAAGATTACTCCAATACGCACAGTTC 146494 ||| |||| ||| |||| | | | |||| || ||||| ||||| || ||||| Sbjct 897 CAGCTATGAAAACAAAACGCGTCTAGTAATGCTCGACGATTATTCCAACACCCACAGCAT 838 Query 146495 GCGCTTTGTAACCGTGAAAGAACTTTGGCATAAACCTGGTAGCACGTGGCTGTATACAAC 146554 || | || || || || || | ||||| | | |||||||| ||||| ||| Sbjct 837 CCGTTACGTGACGGTCAAGGATCAGTGGCACAGCCGCGGTAGCACCTGGCTCTATCGTGA 778 Query 146555 AAGTTCTAATGTGAACTGCATGGTGACTGTAACGACCGCCAGATCAAAATATCCATATGA 146614 | | |||| ||||||| |||||||| | || || || | || || ||||| || | Sbjct 777 GACCTGTAATCTGAACTGTATGGTGACCATCACTACTGCGCGTTCCAAGTATCCTTACCA 718 Query 146615 TTATTTTGTAACGTCGTCTGGTGAAGTGGTGGACATTTCTCCTTTTTACAATGGAAGCAA 146674 || ||| | ||||| | ||||| ||||| |||||||||||||| || || |||| ||| Sbjct 717 TTTTTTCGCCACGTCCACGGGTGACGTGGTTGACATTTCTCCTTTCTATAACGGAACCAA 658 Query 146675 T-GGAAAAC-----ATTTTGGTGAAAACAGGGATAAATTCCATATTATGAAGAACTATTC 146728 | | || || | ||||| |||||| || || || ||| | |||||| | Sbjct 657 TCGCAATACCAGCTACTTTGGAGAAAACGCCGACAAGTTTTTCATTTTCCCGAACTACAC 598 Query 146729 CATGGTGCAATATTACGGAAGGGAGAATGTTCCACTGGTTGCCCACGATTTGGTGGCTTT 146788 || || | | ||||| | |||| | | | | ||||| ||||||||||| Sbjct 597 TATTGTTTCTGACTTTGGAAGAGCGAATTCTGCGCCAGAGACCCACAGGTTGGTGGCTTT 538 Query 146789 CTTTGAAAGAGCTGACTCTATGATGTCTTGGGATGTTTTGGATGAAGGTAACAGTACATG 146848 ||||| | || ||||| |||| || |||||| | ||| || || || || Sbjct 537 TCTTGAACGTGCAGACTCGGTGATCTCCTGGGATATACAGGACGAGAAGAATGTCACCTG 478 Query 146849 TCAATTCACTTTCTGGGAAAAGTCGGAACGCACCATTCGCTCTGAAGCTGATGATACTTA 146908 ||| |||| ||||||||| |||||||| || ||||| || ||||| || || | || Sbjct 477 TCAGCTCACCTTCTGGGAAGCCTCGGAACGTACTATTCGTTCCGAAGCCGAAGACTCGTA 418 Query 146909 CCATTTCACTTCTAACAGCATGACGGCAACTTTTTTAACAAAGAA 146953 ||| || ||||| | ||||| ||||||||| | | ||||| Sbjct 417 CCACTTTTCTTCTGCTAAAATGACTGCAACTTTTCTGTCTAAGAA 373 >seq25159 Length=8155271 Score = 96.9 bits (106), Expect = 5e-15 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151 |||| || ||| ||||||| | || || || | ||| |||| || | || ||||||| Sbjct 7939911 TGGGCAA-GAGGTGTTTGGTTTGGTCCCAGGCCTGATGATGTATGCTACAATATGGCTGA 7939853 Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211 | ||||||||| |||| || ||| | |||||||| |||||||| || ||| | || || | Sbjct 7939852 GGGAGCACAACCGGGTCTGTGACATCCTGAAACAGGAGCACCCAGAGTGGGATGATGAGC 7939793 Query 214212 AGCTGTTCCA 214221 |||||||||| Sbjct 7939792 AGCTGTTCCA 7939783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723112839146880