Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq25193 138 2e-27 seq25185 129 8e-25 seq21615 104 3e-17 seq12986 89.7 7e-13 seq25086 87.8 2e-12 >seq25193 Length=27607347 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | |||||||||||| |||||||||||||||| || | |||| Sbjct 23153484 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTT 23153425 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| ||||| |||||||| ||||| ||||||||||| | Sbjct 23153424 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 23153365 Query 39759 CAACAAGTCTCTCTCC 39774 | || | | |||||| Sbjct 23153364 CTACTACACGCTCTCC 23153349 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| |||||||| | || |||||||| || || ||||| || ||||| || ||||| Sbjct 23154711 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCC 23154652 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAT 39418 |||| || || ||||||||||| ||||| ||||| ||| || ||| Sbjct 23154651 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTTTCTGCTTTGTAT 23154604 >seq25185 Length=22297774 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || || || ||||| || || | ||| | Sbjct 15031339 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCT 15031398 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 15031399 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 15031458 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 15031459 CAACCACTCTCTCACC 15031474 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 |||||||| || ||||||||||| || ||||||||||||| ||||| |||||| ||| Sbjct 15036433 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACATGAGAAATAAAGTAT 15036492 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGT 40091 |||||||| | | ||| || ||||||| Sbjct 15036493 TTTTCATCTGCTTTCAGCTTGTTCCAGT 15036520 >seq21615 Length=1807 Score = 104 bits (114), Expect = 3e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | || || ||||||||||| || || || | || || || ||||| || | Sbjct 744 CACTGAACACCTTCTTGGTTTCCTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCAGGA 803 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||||||||| |||| || || || || || |||| ||||| |||||||| | Sbjct 804 TGGCATAGTCAGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAACGTATCCA 863 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTAT 70505 ||| | ||||| || || | || ||||| ||||| |||||||||| ||| Sbjct 864 GTTCCACTGTTGTGACACCACTGTAGAGCCCCTGAATCACTTTCATGGTTAT 915 >seq12986 Length=1393 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 || ||||||||||| || || |||||||| || ||||| || ||||| || ||||| || Sbjct 1086 ATTTCTGTACATAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 1027 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || |||| ||| ||||| || || | || || || || ||| |||| || ||||| || Sbjct 1026 TTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTCAGTCTGCGACTCGATGAT 968 >seq25086 Length=707082 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| ||||| || || || ||| ||| | || || || || || || | Sbjct 51814 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTGCCATAGTTGGGCTCTGCAATGTGGATGT 51873 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || || |||||||||||||||||||| ||||| ||||| || | || | | Sbjct 51874 TGAGGGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATGGTTT 51933 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | || ||||| | |||||| | | ||| || | ||||| |||| Sbjct 51934 TCTGGGAGATCTCCCACACAGTCTTGTAGAGCTGCTTCAGGTCATCCGGAA 51984 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | |||||||||||| ||||||| || | || || ||||| || || || || Sbjct 57779 GAACCCTCATATGTTTCATAGGGTCCTTGCTCCTTGGCAAGCTCACAGCTGGCTTCCAAA 57838 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||||||||||| || || || || |||| || || | || || || |||| || Sbjct 57839 GCACCGTAATAGATGGTCTCAAAGATCTGCTGGTTCAAGCGCTGGGCCTCGGGACTCTCA 57898 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGG 69125 || || | | ||||| || |||||||||| ||||| ||||| || ||||| || Sbjct 57899 AAGGGGAACCTCATCAGAATGAAGGCATCTGCCAGGCCCTGCACCCCGATGCCGATGGG 57957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686692320691680