Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq25193 114 1e-20 seq25194 89.7 4e-13 seq25185 86.0 5e-12 >seq25193 Length=27607347 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || |||||||| ||||| Sbjct 23151596 CAAGAAGTGCAAGTCACAGAAGCTCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 23151655 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||||||||||||||||||||| || || || ||||| |||||| Sbjct 23151656 ATACATTCGGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 23151703 >seq25194 Length=36020201 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| |||||||| | | Sbjct 29881045 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTTGATGGTGAATTAT 29880986 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 |||| ||| | || || || || || || ||||||||||| || || || || || || | Sbjct 29880985 CATGCCAACTCTACCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 29880926 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | ||||| || || |||||||| || || || Sbjct 29880925 GCTATTCACTGCTTACTTACATGATTGCCCATGTCAC 29880889 >seq25185 Length=22297774 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||| |||||||||||||| ||||||| |||||||| || ||||| | Sbjct 15026998 AAAATCCTTTTGATTTCATGGAAAATATTTCTCTGGAAGGAAAAACAAATTTCTTTGAGA 15026939 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| |||||||| || | | || ||| ||||| |||||| || | Sbjct 15026938 AGCGGGTTTCGGAATATCAACGTTTTGCTGTTATGGCAGAAACAATGGACAATGTCTTCA 15026879 Query 44610 CTACGGATGAAGATTT 44625 || ||||| |||||| Sbjct 15026878 CTCTGGATGCAGATTT 15026863 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| ||||| ||| ||| || ||| |||| || || ||| Sbjct 15035479 CCAGAAGCCCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAATGTTCACTCAGAGATG 15035420 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| | || ||||| || |||||||||||| Sbjct 15035419 TACAGCTTGCTCATAGACACCTACATCAAAGAT 15035387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397333873198060