Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01-
02] 25,212 sequences; 1,117,373,619 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq25193 114 1e-20
seq25194 89.7 4e-13
seq25185 86.0 5e-12
>seq25193
Length=27607347
Score = 114 bits (126), Expect = 1e-20
Identities = 90/108 (83%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
|||||||| ||| | ||||||| || ||||| ||||| || || |||||||| |||||
Sbjct 23151596 CAAGAAGTGCAAGTCACAGAAGCTCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 23151655
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||||||||||||||||||||| || || || ||||| ||||||
Sbjct 23151656 ATACATTCGGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 23151703
>seq25194
Length=36020201
Score = 89.7 bits (98), Expect = 4e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106
||||||| ||||| || || ||| | || ||||| || ||| |||||||| | |
Sbjct 29881045 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTTGATGGTGAATTAT 29880986
Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166
|||| ||| | || || || || || || ||||||||||| || || || || || || |
Sbjct 29880985 CATGCCAACTCTACCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 29880926
Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203
| ||| | ||||| || || |||||||| || || ||
Sbjct 29880925 GCTATTCACTGCTTACTTACATGATTGCCCATGTCAC 29880889
>seq25185
Length=22297774
Score = 86.0 bits (94), Expect = 5e-12
Identities = 101/136 (74%), Gaps = 3/136 (2%)
Strand=Plus/Minus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || |||||||| |||||||||||||| ||||||| |||||||| || ||||| |
Sbjct 15026998 AAAATCCTTTTGATTTCATGGAAAATATTTCTCTGGAAGGAAAAACAAATTTCTTTGAGA 15026939
Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609
| || ||| |||||||| || | | || ||| ||||| |||||| || |
Sbjct 15026938 AGCGGGTTTCGGAATATCAACGTTTTGCTGTTATGGCAGAAACAATGGACAATGTCTTCA 15026879
Query 44610 CTACGGATGAAGATTT 44625
|| ||||| ||||||
Sbjct 15026878 CTCTGGATGCAGATTT 15026863
Score = 82.4 bits (90), Expect = 6e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987
|||||||| || ||||| ||||| ||||| ||| ||| || ||| |||| || || |||
Sbjct 15035479 CCAGAAGCCCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAATGTTCACTCAGAGATG 15035420
Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||||| | || ||||| || ||||||||||||
Sbjct 15035419 TACAGCTTGCTCATAGACACCTACATCAAAGAT 15035387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397333873198060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |