Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq12986 87.8 2e-12 seq25086 84.2 2e-11 >seq12986 Length=1393 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||||||||| || | || | ||||||||||| | ||||| ||||||||| Sbjct 1093 CTCCACGATTTCTGTACATAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCT 1034 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTT 79217 |||| ||| |||| ||| |||||| |||||| || || ||||||||| ||| || Sbjct 1033 CTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTCAGTCTGCGACTC 974 Query 79218 GAGAACGCCGTCCCAGATGTCCCGGGCC 79245 || | | ||| ||||| | | ||||| Sbjct 973 GATGATGGCGTACCAGAGCTGCTGGGCC 946 >seq25086 Length=707082 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||||||||| || | || | ||||||||||| | ||||| ||||||||| Sbjct 60505 CTCCACGATTTCTGTACATAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCT 60564 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCA 79206 |||| ||| |||| ||| |||||| |||||| || || ||||||||| Sbjct 60565 CTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTCA 60613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548351932409280