Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq25033 176 5e-39 >seq25033 Length=1520908 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| ||||| |||||||| || || || || |||||| | || Sbjct 769879 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 769938 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || |||||||| || || ||||| || |||||| Sbjct 769939 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 769998 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 769999 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 770058 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| || |||| || | ||||| Sbjct 770059 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 770105 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||| ||||| ||| | || Sbjct 769651 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 769710 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||| || || || ||||| ||||||||| Sbjct 769711 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCACCAGACCAG 769770 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 769771 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 769830 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| || ||||||| | ||||| Sbjct 769831 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 769877 Score = 134 bits (148), Expect = 2e-26 Identities = 117/144 (81%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| ||||| |||||||| || || |||||||||||| | || Sbjct 769193 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 769252 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| ||||| |||||||| || || |||||||| |||||| Sbjct 769253 GACACCATTGAGAATGTGAAGGCAAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAG 769312 Query 27526 CAGCGTCTAATT-TTTGCTGGTAA 27548 ||| | || ||| || ||||| || Sbjct 769313 CAGAGGCTGATTCTTCGCTGGCAA 769336 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27445 ACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAG 27504 ||||| ||||| ||| | |||| | ||| | ||| ||||||| || || ||||||||| Sbjct 769462 ACTCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAG 769521 Query 27505 GAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGAT 27564 || || ||||| |||||||||||| | | || || ||||| ||||| || ||||||| Sbjct 769522 GAAGGCATTCCGCCAGACCAGCAGAGATTGATCTTCGCTGGCAAGCAGCTGGAGGATGGA 769581 Query 27565 CGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTT 27624 || || || | ||||| || |||| |||||||| ||||| || |||| |||| || Sbjct 769582 CGCACTCTGTCCGACTACAACATCCAGAAGGAATCTACTCTGCACTTAGTGCTGCGCCTC 769641 Query 27625 CGCGGTGG 27632 | ||||| Sbjct 769642 AGGGGTGG 769649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570130666677440