Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq25143 221 2e-52 seq25181 98.7 1e-15 >seq25143 Length=5469902 Score = 221 bits (244), Expect = 2e-52 Identities = 617/933 (66%), Gaps = 24/933 (3%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||||| ||||||| ||||| ||||| |||||||| || || ||||| |||| Sbjct 1486448 CCGCTGAGCCAAGAAGAGGAAGAGTTCCCCATTGCCTACTCCATGGTCATCCATGACAAA 1486507 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||||||||||||| | |||||| || || |||| ||||| |||||| ||||||||||| Sbjct 1486508 ATCGAGATGTTCGAGAGGCTCCTGCGGTCCCTCTATGCCCCCCAGAACGTCTACTGCGTC 1486567 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGG--GGCGTCTCGGCCATCGCCAGGT 13848 ||| | ||| ||||||| | || ||| | || | ||| ||||||||| | Sbjct 1486568 CACATTGACAACAAGTCCTCAGCCGCCTTC--CAGGAAGCCGTGAGGGCCATCGCAGCTT 1486625 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 ||||||| || ||| | |||| ||| ||| | |||||||| || | ||||||| | Sbjct 1486626 GCTTCCCCAATGTGTTCGTGGCGAGCCGCCTGGAAGACGTGGTCTATGCCTCCTGGTCCC 1486685 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGT 13968 | ||||||||||||||| ||||||| ||||||| |||| | ||| | Sbjct 1486686 GGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATGCCCTGGCACT 1486745 Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028 | | |||||| ||||| | || ||||| ||||||| || || || || || | Sbjct 1486746 ATGTCCTCAACACCTGCGGCACTGATTTCCCCATCAAGACTAATGCCGAAATAGTCCGTG 1486805 Query 14029 CGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCC--CAAC-CACA 14085 | |||||| ||| || |||| | ||||| ||| | ||| | | | || Sbjct 1486806 CCCTGAAGTTGCTGCAGGGGCGGAACAGCATGGAGTCGGAG---AAGCCGTCGGCGCTCA 1486862 Query 14086 AGCTGCACCGC-ATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACC 14144 ||| | | ||| ||| | | || | ||||| || | || | | || Sbjct 1486863 AGCGGGAGCGCTGGCAGTACCA-CCATGAGGTGG-----GGAAG-GTCATCTCCCGGACA 1486915 Query 14145 GGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTT 14204 | || || || |||||||| | || || || || |||| ||||| ||| | Sbjct 1486916 GCCACCAAGAAACTGCCGCCGCCCCACAACTACCATATGTTCACGGGCAACGCGTACGTC 1486975 Query 14205 GCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATG 14264 | ||||||||| | |||||| | | || || ||||| | | | | | | || | Sbjct 1486976 GTGGTCACCCGCGCCTTCGTGCAGCACATCTTCGAGGACCACGCAGCGCAGCAGTTCCTC 1487035 Query 14265 CACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATG 14324 | ||| | ||||||| |||||||| ||||||||| | |||||||| | | | || Sbjct 1487036 GAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACGTCTGGGCCACGCTCAACCGTGTG 1487095 Query 14325 TACGGGACGCCCGGGGGGATCCCCGTTCACGT--CAAGTACGACACCTCGGACATGTGGG 14382 ||| |||||| | || ||| || || ||||| | || |||||||||| Sbjct 1487096 CCCGGTGTGCCCGGCGCCATGCCC--TCGAGTGACAAGTTCCACCTCTCGGACATGAACT 1487153 Query 14383 CCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGT 14442 || | | | | ||||||||| | ||| |||||||| | || || || || | | Sbjct 1487154 CCCTGCCCCGCCTGGTCAAGTGGGAGTACCTGGAGGGGGACACCAGCAAGGGCGCGCCCT 1487213 Query 14443 ACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGA 14502 ||||||| ||| |||| ||| | | | |||| |||| |||| ||||||||| Sbjct 1487214 ACCCGCCCTGCACCGGCCGGCACCAGCGCTCAGTCTGTATCTACGGGGTGGGCGACGTGC 1487273 Query 14503 AGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGAG 14561 ||| || ||| | | ||||| || ||||||||||||||| | | |||||| Sbjct 1487274 CCTGGATGCTCCAGCAGCAC-CACCTCTTGGCCAACAAGTTCGACCCCTTGGTGGACGAC 1487332 Query 14562 TTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 ||| | | |||||||| ||| || ||||| Sbjct 1487333 GCCGCTATCCAATGTCTGGAGGAGCACCTGCGC 1487365 >seq25181 Length=17432597 Score = 98.7 bits (108), Expect = 1e-15 Identities = 224/332 (67%), Gaps = 14/332 (4%) Strand=Plus/Minus Query 13729 AGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCG 13788 || || ||| || ||||| ||| | ||||| | ||| || |||||| |||||||| Sbjct 8048569 AGTTCAAGACCTTTGAGCGGCTCTTCAGGGCAGTGTACATGCCCCAGAACATCTACTGCA 8048510 Query 13789 TCCACGTGGACTCCAAGTC--CGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAG 13846 |||||||||| ||||| | |||| | | ||| | || || | | | Sbjct 8048509 TCCACGTGGATGCCAAGGCACCGGC--CCACTTCCATCAGGCAGTGAGGTACCTGTTGGA 8048452 Query 13847 GTGCTTCCCTAACGTGGCCCTGGCCCACCGG-CTGCACGACGTGGTGTACGGCTCCTGGA 13905 |||||||| |||| ||| ||| |||| | | || ||||| || || ||| Sbjct 8048451 CTGCTTCCCCAACGCCTTCCTCGCCTCCCGGGCAGAGCGG-GTGGTCTATGG----TGGC 8048397 Query 13906 GTC----GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAG 13961 || || ||| ||| |||||| ||||||| |||||| ||||| |||| Sbjct 8048396 ATCTCCCGCCTGCGGGCTGACCTCCACTGCATGAGAGACCTGCTGGCCTCAGCCGTGCCC 8048337 Query 13962 TGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATC 14021 ||| | |||||||||||| || || ||||||||| | |||||||||| |||||| Sbjct 8048336 TGGCGCTACCTGCTCAACACCTGTGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATT 8048277 Query 14022 GTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAA 14053 || ||| |||||||| ||| || |||||||| Sbjct 8048276 GTCCGGCTGCTGAAGGGCCTTGGGGGCAAGAA 8048245 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 ||| ||| ||| |||||| ||||||| |||||| ||||| | || ||| | Sbjct 8036895 CGCCTGCGGGCTGACCTCCACTGCATGAGAGACCTGCTGGCCTCAGCTGTGCCCTGGCGC 8036836 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 |||||||||||| ||||| |||||| || | |||||||||| |||||| || ||| Sbjct 8036835 TACCTGCTCAACACCTGCGGCCAGGACTTTCCCTTGAAGACCAACCGGGAGATTGTCCGG 8036776 Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAA 14053 |||||||| ||| || |||||||| Sbjct 8036775 CTGCTGAAGGGCCTTGGGGGCAAGAA 8036750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658531598341120