Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq25194 122 7e-23 seq25055 100 2e-16 >seq25194 Length=36020201 Score = 122 bits (134), Expect = 7e-23 Identities = 130/169 (77%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| || ||||||||||| || || || || ||||||| || Sbjct 29884421 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGAAAACCATAAACTGGTCCCAAATC 29884480 Query 30283 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||||| || || ||||| ||| ||| ||| |||| || || | ||||| || || | Sbjct 29884481 TCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGCGAACCATTAGCAT 29884539 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||||||| || || || ||||||||||||||| ||||| || || Sbjct 29884540 CCCAGATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 29884588 Score = 109 bits (120), Expect = 4e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 |||||| ||||| || || |||||||| || || || || |||||||| || || || || Sbjct 29880882 TAGCCCTGTGACATGGGCAATCATGTAAGTAAGCAGTGAATAGCTGGCAATATTGAAAGG 29880941 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 30060 || || || ||||| || || |||||||||||||| || || || | || || || Sbjct 29880942 CACTCCTAGTCCCATATCTCCAGACCTCTGGTAGAGTTGGCATGATAATTCACCATCAAG 29881001 Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | ||| ||||| ||||| | |||||| || Sbjct 29881002 AACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAG 29881046 >seq25055 Length=2582048 Score = 100 bits (110), Expect = 2e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 110404 AGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 110463 |||||||||||||| |||| || || |||||| ||||||| | |||||| || || ||| Sbjct 107821 AGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTCAGAGGACGATTCTTCTCAGGAATG 107880 Query 110464 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 |||||||| || ||| |||||||||||| | ||||| || ||| Sbjct 107881 GAGAACCAGGTTTTTTTACCCATTATCAAGGCATTCTGTTTACCT 107925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406185552495504