Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq25194 120 2e-22 seq25055 100 2e-16 >seq25194 Length=36020201 Score = 120 bits (132), Expect = 2e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 |||||| ||||| || || |||||||| || || || || |||||||| || || || || Sbjct 29880882 TAGCCCTGTGACATGGGCAATCATGTAAGTAAGCAGTGAATAGCTGGCAATATTGAAAGG 29880941 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || ||||| || || |||||||||||||| ||||| || | || || || Sbjct 29880942 CACTCCTAGTCCCATATCTCCAGACCTCTGGTAGAGTTGGCATGATAATTCACCATCAAG 29881001 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||||||||| ||||| | ||||| ||| Sbjct 29881002 AACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGA 29881047 Score = 100 bits (110), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 || ||||||||||| || || || || ||||||| |||||||| || || ||||| ||| Sbjct 29884443 AAGTGCCTCCACTGAAAACCATAAACTGGTCCCAAATCTCCCTCCTCTCTGGTGCT-GAA 29884501 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | ||||| || || ||||||||||| || || || | Sbjct 29884502 ACCCTGCTTATCCAGGAACTCACGCGAACCATTAGCATCCCAGATCTTCACACCTTTTGC 29884561 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||||||||||| ||||| || || Sbjct 29884562 AGAGAGCTCTTTGGCATTTGTAGAACC 29884588 >seq25055 Length=2582048 Score = 100 bits (110), Expect = 2e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 114287 AGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 114346 |||||||||||||| |||| || | |||||| ||||||| | |||||| || || ||| Sbjct 107821 AGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTCAGAGGACGATTCTTCTCAGGAATG 107880 Query 114347 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||||| || ||| |||||||||||| | ||||| |||||| Sbjct 107881 GAGAACCAGGTTTTTTTACCCATTATCAAGGCATTCTGTTTACCT 107925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406038397725832