Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq25033 109 1e-18 >seq25033 Length=1520908 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| || | | || | ||||||| Sbjct 770090 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 770031 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| |||||||||||||| | | || ||||| || || Sbjct 770030 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 769971 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| ||||| || || || Sbjct 769970 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATG 769914 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||| || |||| |||||| Sbjct 769913 GTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 769879 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| || | | || | |||||| Sbjct 769862 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 769803 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| | |||||||||||| | | || ||||| || || Sbjct 769802 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGAATGCCTTCTTTATCC 769743 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || || ||||| || Sbjct 769742 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGAGTGATG 769686 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 769685 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 769651 Score = 84.2 bits (92), Expect = 5e-11 Identities = 110/150 (73%), Gaps = 7/150 (5%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGA-TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || || ||||||| | |||||||||||||| | | || ||||| || || || ||||| Sbjct 769336 TTGCCAGCGAAGAATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTT 769277 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCC 152077 | || ||| |||| | | |||| ||| ||| || ||||| || || || ||||| Sbjct 769276 TGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTCTTGCC 769220 Query 152078 CGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || |||||||| |||| |||||| || Sbjct 769219 AGTAAGGGTCTTCACAAAGATCTGCATGTT 769190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153448082709252