Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq25159 167 3e-36 seq9637 129 8e-25 seq25150 98.7 1e-15 >seq25159 Length=8155271 Score = 167 bits (184), Expect = 3e-36 Identities = 228/315 (72%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | ||| Sbjct 7937716 GGAAAGCTGTGAAGGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGATGCAG 7937775 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || || || | ||| || |||||||| |||||||||||| | |||| Sbjct 7937776 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 7937835 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || ||||||| ||||| || ||||| || || || | ||| | || Sbjct 7937836 AGCAGATAGCATTTCCCATGAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATTG 7937895 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCC 8527 | |||||||||||||| || || |||||||| | |||||| || | |||||||||| Sbjct 7937896 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCC 7937954 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT- 8586 | ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 7937955 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTA 7938014 Query 8587 -TTTATTAATAAAAA 8600 || ||||||||||| Sbjct 7938015 ATTGATTAATAAAAA 7938029 Score = 158 bits (174), Expect = 2e-33 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || |||||||| ||||| ||| ||| ||||| || || |||||||| Sbjct 7939768 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGG 7939827 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||| ||||| ||||| || || || |||||||| || || || Sbjct 7939828 ATGTCACAGACCCGGTTGTGCTCCCTCAGCCATATTGTAGCATACATCATCAGGCCTGGG 7939887 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| ||||||| || |||| | ||| || ||| || | | ||||| Sbjct 7939888 ACCAAACCAAACACCTCTTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 7939947 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || ||||||||| Sbjct 7939948 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 7940007 Query 9484 TG 9485 || Sbjct 7940008 TG 7940009 >seq9637 Length=1534 Score = 129 bits (142), Expect = 8e-25 Identities = 414/636 (65%), Gaps = 20/636 (3%) Strand=Plus/Plus Query 78459 ATAAAAAATTTGTCCCTATTTTCTCCAAAGT-----GT-TCGTTATTAGATCCATTGTAA 78512 || ||||| ||||| ||||||||||||| || | | ||| | ||| || || Sbjct 613 ATGAAAAACTTGTCGGCGTTTTCTCCAAAGTAGCTGGTATTGCGATTGGTTCCGTTATAG 672 Query 78513 AAAGGAGAAATGTCCACAACTTCACCACCAGATGTCACAAAGAAATCATAGGGATACTTA 78572 |||||||||||||| || || ||||| || || | || |||| || |||||||| Sbjct 673 AAAGGAGAAATGTCAACCACGTCACCCGTGGACGTGGCGAAAAAATGGTAAGGATACTTG 732 Query 78573 GATCTAGCTGTAGTTACGGTTACCATGCAATTTACATTGCAGCTTGTTGTATACAACCAA 78632 || | || ||||| | ||| ||||| || || | ||| ||| | ||| | ||| Sbjct 733 GAACGCGCAGTAGTGATGGTCACCATACAGTTCAGATTACAGGTCTCACGATAGAGCCAG 792 Query 78633 GTACTGCCGGCTTTGTGCCAAAGTTCCTTTACAGTTACGTAACGGGCACTGTGTGTGTTG 78692 || || ||| ||||||| | ||||| || || ||||||||| ||||| |||||| Sbjct 793 GTGCTACCGCGGCTGTGCCACTGATCCTTGACCGTCACGTAACGGATGCTGTGGGTGTTG 852 Query 78693 GAGTAATCATC-TTCA--ATCAGATGCATAGTTTCATTAACATAACTGTCTTTATGATAA 78749 || ||||| || || | ||| || |||| || |||| ||||| ||||||| Sbjct 853 GAATAATCGTCGAGCATTACTAGACGC---GTTTTGTTTTCATAGCTGTCCCTATGATAC 909 Query 78750 TTTACATAAGTAACACCTGCCACATTTCTAACCACAGAATTGTAACACCTATTTAATCTA 78809 || || ||||| | | | |||| |||| ||| | | || Sbjct 910 GCCACGAAAACCGTGCCTGCTATAACGCGGCTGTAAGAACTGTAGCACTGACTGTGGCTG 969 Query 78810 TTAATATAACTAACTTCCCACATTGGTACAGCTAGGCGTTC----TTGACTGAATCCCAG 78865 || |||| | || |||||||| || || | | ||| ||| ||| ||||| Sbjct 970 TTGATATGATGAATCTCCCACATAGGAGGCGCCACGTATTCCGTGTTG-CTG---CCCAG 1025 Query 78866 CAGGTGATTTTCCCTGATAAAAGAGTAACTCTGGCGAAATGTCAAAATCTTCTGGTAGAT 78925 ||| | | | ||| ||| ||| || | ||||| ||||||| ||||||||||| Sbjct 1026 CAGATAAGTGGTGTGGATGTAAGCGTAGCTACGACGAAACGTCAAAACCTTCTGGTAGAC 1085 Query 78926 GTGCACCTTGAACGTATATGGCTTAATATCACGCTTGTAGACCACCATGATGCCTTCATC 78985 | ||||| || || | | || | || |||||||||||||||||||| || || Sbjct 1086 CCGTACCTTAAAGGTGTGCGCGACGATGTTGCGTTTGTAGACCACCATGATGCCCTCGTC 1145 Query 78986 AAAATCTTCCTTTGTAGGTTTGAAACTATCACATCGAATGTTCTGTTCGAAACGAAGAAG 79045 | ||||| || | || || | || || || |||| || |||| ||| Sbjct 1146 CAGGTCTTCATTGATGGGCTTCATCGGGGTGCAGACGATATTACGTTCAAAGCGAATAAG 1205 Query 79046 ATCCGTTCCCTGAGCCATCGAGCACACACGATATGG 79081 |||||| ||||| ||||| || ||||| ||||| || Sbjct 1206 ATCCGTACCCTGGGCCATGGAACACACGCGATAGGG 1241 >seq25150 Length=5065642 Score = 98.7 bits (108), Expect = 1e-15 Identities = 207/309 (67%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || ||||||| | |||| ||| ||| || ||| || || || || Sbjct 3895165 CATCCGGCACACGGAACGACACATACGGGCACTTCTTCACATTGAGGCACACAAGCTTCT 3895224 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 | | ||| |||| || ||| | || || |||| || ||||| ||||| |||| Sbjct 3895225 TGAGTGATGCTGTCTTCACTATCTCAAAGCCAGTTGCTCCACCAAAGGTACTGGGTTTCC 3895284 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 |||| | |||||||||||| ||| | | || || || ||||| || ||||| || | Sbjct 3895285 AGTATTCTGGGGAGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAATGGAGCTCCAA 3895344 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||||| || || ||||| | ||||| |||| || || | || || || | Sbjct 3895345 TCTCCACCATGCTTTCCCCAAAGATTCCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCG 3895404 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 || | ||||| ||| || | |||||| || || | ||||| || || |||| | Sbjct 3895405 GATAGAACTCCAGAGCGTCAATGTCTCCATATAGCTCTTGCAGTTCTGCTGCTTTCTCTT 3895464 Query 8577 TTTCTCCTG 8585 ||||||| Sbjct 3895465 CCTCTCCTG 3895473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716650876276480