Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq25033 127 5e-24 >seq25033 Length=1520908 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || || || || || || |||||||| || || || || ||| Sbjct 769882 CAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAAGTTGA--GCCCAGTG 769939 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||||||||| || || || ||||||| Sbjct 769940 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGC 769999 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | || || | || || ||| Sbjct 770000 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 770059 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 770060 TCCAGAAGGAATCCACCCTCCATCTTGT 770087 Score = 122 bits (134), Expect = 2e-22 Identities = 139/185 (75%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 177959 CACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGAC 178016 ||| || |||||||| || ||| ||||||||||||| || || ||||| |||||| Sbjct 769461 CACTCTGGAGGTGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGAC 769518 Query 178017 AAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGAT 178076 || ||||| || || || |||||||| || | |||||||| || || ||||| || ||| Sbjct 769519 AAGGAAGGCATTCCGCCAGACCAGCAGAGATTGATCTTCGCTGGCAAGCAGCTGGAGGAT 769578 Query 178077 GGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 ||| | ||||| |||| || ||| |||| || ||||| || ||||| | || || | Sbjct 769579 GGACGCACTCTGTCCGACTACAACATCCAGAAGGAATCTACTCTGCACTTAGTGCTGCGC 769638 Query 178137 CTCAG 178141 ||||| Sbjct 769639 CTCAG 769643 Score = 91.5 bits (100), Expect = 4e-13 Identities = 108/143 (76%), Gaps = 5/143 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| ||||| || || ||| Sbjct 769196 CAGATCTTTGTGAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTTGA--GCCCAGTG 769253 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||| || |||||||||||||| || ||||| ||||||| Sbjct 769254 ACACCATTGAGAATGTGAAGGCAAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAGC 769313 Query 178042 AACGACTTA-TCTTCGCCGGAAA 178063 | | || | ||||||| || || Sbjct 769314 AGAGGCTGATTCTTCGCTGGCAA 769336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203342360215128