Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq26544 114 2e-20 seq43608 105 8e-18 seq36225 93.3 5e-14 >seq26544 Length=14703 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 8178 CCTCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 8237 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 8238 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 8297 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 8298 CAACCACTCTCTCACC 8313 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 24522 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 24581 |||||||| || ||||| |||||||||||||||||||||| || || || || ||| Sbjct 12843 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAACGCCAGGACGTGCGAGATGAAGTAT 12902 Query 24582 TTTTCGTCTGGTGTTAGTTTATTCCAAT 24609 ||||| |||| | | || |||||||||| Sbjct 12903 TTTTCATCTGCTTTCAGCTTATTCCAAT 12930 >seq43608 Length=19049 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 3257 CCTCATCTCTGCTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3198 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 3197 TCAGCCAAAAAATAGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3138 Query 24277 C 24277 | Sbjct 3137 C 3137 >seq36225 Length=28417 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 17208 TCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCGGCGATGTGGATGT 17149 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || || ||||||||||| ||||| ||||| || ||||| || | ||| || | Sbjct 17148 TGAGAGACTGGCTCTGATCGATGAAAGCTCCTCTGTCCGCTGCCATCTTGAGGATGGTTT 17089 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | || ||||| | || ||||| | |||| | || || |||| Sbjct 17088 TCTGGGAGATCTCCCACACTGTCTTATAGAGCTGCTTCAAGTCATCAGGAA 17038 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 || || ||||| ||||||||||| ||||| || || | || || |||| || || || Sbjct 8182 ACCCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCGGGCTCGCTGC 8123 Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || || || || ||||| |||||| || |||||| | | || || ||||||||| Sbjct 8122 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAGATGCCACGG 8064 Query 54148 TTCCAAGTATATGGTCATAACTCCAGG 54174 |||||||| |||| | | | ||||| Sbjct 8063 CTCCAAGTAGATGGCAAAAGCCCCAGG 8037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593324556101520