Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq51860 136 4e-27 seq43608 120 3e-22 seq26544 93.3 4e-14 >seq51860 Length=4005 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| || |||||| | || || || ||| Sbjct 3651 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACAATCACCCTGGAAGTTGAGCCCAGT 3592 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || || |||||| | || ||| Sbjct 3591 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCCGATCAG 3532 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| |||||||||| Sbjct 3531 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 3472 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || ||||| ||| ||||| |||| || ||| Sbjct 3471 ATCCAGAAGGAGTCCACTCTCCATCTTGTGCTGCGCCTGAGAGGTGGC 3424 Score = 132 bits (146), Expect = 5e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || ||||| || || || || || || ||||| ||| | || || || Sbjct 3884 GAAAAATGCAGATCTTCGTGAAGACCCTAACTGGTAAGACCATTACCCTGGAAGTTGAGC 3825 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 ||| |||| | | | | | |||| || || | ||||| || || |||||| | | Sbjct 3824 CCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCCG 3765 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| | || |||| || ||||| |||||||| || | |||||||| ||||| Sbjct 3764 ATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACT 3705 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| ||||| | ||| ||||| |||| || ||| Sbjct 3704 ACAACATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGCCTGAGAGGTGGC 3652 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || |||||| | || || || ||| Sbjct 3423 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACAATCACCCTGGAAGTTGAGCCCAGT 3364 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || || |||||| | || ||| Sbjct 3363 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATCCCCCCCGATCAG 3304 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| |||||||||| Sbjct 3303 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 3244 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || ||||| ||| |||| |||| || || Sbjct 3243 ATCCAGAAGGAGTCCACTCTCCATCTTGTGCTGCGTCTGAGAGGTGG 3197 >seq43608 Length=19049 Score = 120 bits (132), Expect = 3e-22 Identities = 95/114 (83%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| || ||||||||||| ||||| || |||||||| || |||| || Sbjct 5 GAGCCGCTGCTGCGGGACAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAT 64 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 65 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGTG 118 >seq26544 Length=14703 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 8303 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 8244 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || ||||| ||| | Sbjct 8243 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTCATTAGCAGAG 8184 Query 117162 ACGAGG 117167 | |||| Sbjct 8183 ATGAGG 8178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514874653600240