Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq16767 123 5e-23 seq40465 84.2 4e-11 >seq16767 Length=29411 Score = 123 bits (136), Expect = 5e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 51895 GCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATA 51954 || ||||||| ||| ||| | || ||||| || || || |||||||| ||||| ||||| Sbjct 18379 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAGTATTTGGATACAGTATTCTTCATC 18438 Query 51955 CTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTT 52014 || ||||| |||||||| || | ||||| || || || ||||| ||||| || ||||| Sbjct 18439 CTGAGGAAGAAATTTAACCAAATCAGTTTCCTGCATGTCTATCACCATTTCACCATGTTC 18498 Query 52015 ACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || | | ||||| |||||||||||| |||| || || || Sbjct 18499 ACGTTGTGGTGGATTGGTATTAAATGGGTTGCAGGTGGACA 18539 Score = 98.7 bits (108), Expect = 2e-15 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || || || ||||||||| | ||| | ||||| ||||| |||||||||| |||||||| Sbjct 21109 GCTTTCTTCGGAGCTCAGATGAATGCGTTTATTCATGTCATTATGTACATGTATTATGGA 21168 Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| |||| || ||||| ||| || ||||||||||| || | || || Sbjct 21169 TTAGCTGCCTGTGGCCCTAAATTTCAGAA-GTACCTGTGGTGGAAACGATACTTGACCAT 21227 Query 52176 AATGCAGTTGGTA 52188 | |||| |||||| Sbjct 21228 ATTGCAATTGGTA 21240 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 21742 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 21801 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| || | | ||||| || || || || Sbjct 21802 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTGTCACCTTCATTTTCCTCTTCGG 21861 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | ||||| ||| Sbjct 21862 TAACTTCTACTATCGGACATATAAG 21886 >seq40465 Length=31615 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 189482 GAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACT 189541 || || || |||||| | || | |||||||| ||||| |||||||| || || |||||| Sbjct 2497 GAGGGCAAGATGCATGGCTTCCTGCGAATGTACTGGGCCAAGAAGATCCTGGAGTGGACT 2556 Query 189542 AGAACACCTGAAGACGCTTTGAGTTATAGTATCTATTTGAACAACAAGTACGAACTAGAC 189601 | | || || || || || | | | ||||| | ||| || ||||| || ||| Sbjct 2557 CGCTCCCCCGAGGAGGCCCTGCGGTTTGCCATCTACCTCAACGACCGCTACGAGCTGGAC 2616 Query 189602 GGCACGGATCCTAACGGATACGTAGG 189627 || | |||||| |||||||||||||| Sbjct 2617 GGGAGGGATCCCAACGGATACGTAGG 2642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922579423679960