Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq36225 141 8e-29 seq51860 98.7 9e-16 >seq36225 Length=28417 Score = 141 bits (156), Expect = 8e-29 Identities = 122/151 (81%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| |||||| |||||||| || || ||||| || || ||||| ||||| || | Sbjct 9974 CCACCTCATCTTTGCTGGTGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGG 9915 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||||| || ||||||||| || || ||||| || ||||||||||||||||| || | Sbjct 9914 TGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 9855 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||| |||||| ||||||||||||||| || Sbjct 9854 TGCCGGTCTCGGTCTGCGACTCGATGATGGC 9824 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 ||||||| || |||| || ||||| || ||||| || || |||| || || ||||| | Sbjct 8187 TTTCAACCCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCGGGCTC 8128 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 || ||| ||||| || |||||||| || || || | || || || | |||| ||||| Sbjct 8127 GCTGCTCTTCTTTCCCAGTGTTCTTCTTTAAGTCAAGGAACTCAAAGATGTCCAGATGCC 8068 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| | ||| | |||||| || || ||||||| Sbjct 8067 ACGGCTCCAAGTAGATGGCAAAAGCCCCAGGTCTCT 8032 >seq51860 Length=4005 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 3424 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACAATCACCCTGGAAGTTGAGCCCAG 3365 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || |||||||||||| | || ||||| || Sbjct 3364 TGACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATCCCCCCCGATCA 3305 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | || || || |||||||| ||| ||||||| | | | || || ||| || | Sbjct 3304 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACCCTGTCCGACTACA 3246 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| || || || || ||||| ||||| || || | ||||| || |||| Sbjct 3245 ACATCCAGAAGGAGTCCACTCTCCATCTTGTGCTGCGTCTGAGAGGTGGTA 3195 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || ||||| ||||| || |||||| | || ||||| || Sbjct 3652 CATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACAATCACCCTGGAAGTTGAGCCCAG 3593 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || | || |||||||||||| | || ||||| || Sbjct 3592 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCCGATCA 3533 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | || || || |||||||| ||| ||||||| | | | || || ||| || | Sbjct 3532 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACCCTGTCCGACTACA 3474 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || || || ||||| ||||| || || | ||||| || || Sbjct 3473 ACATCCAGAAGGAGTCCACTCTCCATCTTGTGCTGCGCCTGAGAGGTGG 3425 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| ||||| || || || || || || ||| | || ||||| || Sbjct 3883 AAAAATGCAGATCTTCGTGAAGACCCTAACTGGTAAGACCATTACCCTGGAAGTTGAGCC 3824 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| |||| | || || | || |||||||||||| | || ||||| Sbjct 3823 CAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCCGA 3764 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 |||||| | || || || |||||||| ||| ||||||| | | | || || ||| | Sbjct 3763 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACCCTGTCCGACT 3705 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| || || ||||| || || || |||| || | ||||| || || Sbjct 3704 ACAACATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGCCTGAGAGGTGG 3653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445468299292080