Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq26544 123 3e-23 seq43608 105 8e-18 seq36225 96.9 4e-15 >seq26544 Length=14703 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| | Sbjct 8178 CCTCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 8237 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 8238 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 8297 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 8298 CAACCACTCTCTCACC 8313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028 |||||||| || |||||||||||||||||||||||||||| || || || || ||| Sbjct 12843 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAACGCCAGGACGTGCGAGATGAAGTAT 12902 Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCAAT 34056 ||||| |||| | | || |||||||||| Sbjct 12903 TTTTCATCTGCTTTCAGCTTATTCCAAT 12930 >seq43608 Length=19049 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| |||||||| |||||||| ||||||| || | || | Sbjct 3257 CCTCATCTCTGCTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3198 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || || || || ||||||||||||||||| ||||| ||||| | Sbjct 3197 TCAGCCAAAAAATAGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3138 Query 33724 C 33724 | Sbjct 3137 C 3137 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || |||||||||||||| || || || ||||| || || ||| Sbjct 4508 GACATGACTCCCATCCTCTGATATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCT 4449 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || || |||||||| ||||| ||||| Sbjct 4448 TCCAGAGAGATGTTCTCCATGAAGTCAAAAGGATT 4414 >seq36225 Length=28417 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | ||| |||||||||||||| || || || | ||| || ||||| || || | Sbjct 1276 CACTGAAGACTTTCTTTGTTTCCTTGTGCAGGTTGGACACGGCGATCCTGGCCGCCAGGA 1217 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 |||| || || || || | || || ||||| ||| | ||||| ||||| ||||||| Sbjct 1216 TGGCGTAGTCGGGGTGCTTGGTGGTCAGGGTGGCGGCTGTCTCGGCAGCCAGCGTGTCCA 1157 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 || ||||| || || || | || | || ||||| |||||||| Sbjct 1156 GCTCCACCGTGGTGACGCCGCTGTACAGCCCCTGAATCACCTTCAT 1111 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 17208 TCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCGGCGATGTGGATGT 17149 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || || ||||||||||| ||||| ||||| || ||||| || | ||| || | Sbjct 17148 TGAGAGACTGGCTCTGATCGATGAAAGCTCCTCTGTCCGCTGCCATCTTGAGGATGGTTT 17089 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | || ||||| | || ||||| | |||| | || || |||| Sbjct 17088 TCTGGGAGATCTCCCACACTGTCTTATAGAGCTGCTTCAAGTCATCAGGAA 17038 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || ||||| ||||||| || || || |||| ||| || || || || || |||| Sbjct 13046 CATAGGTTTCATAGGGTCCTTGCTCCTTGGCCAGTTCACAGCTGGCTTCCAAAGCGCCGT 12987 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 |||||||||| ||||| |||| || || | ||||| || ||||| ||||| || Sbjct 12986 AATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGTGCCTCGGGGCTCTCAAAGGGGA 12927 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 | | | ||| || || ||||| || | || || || || || ||||| || Sbjct 12926 ACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGG 12875 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 || || ||||| ||||||||||| ||||| || || | || || |||| | || || Sbjct 8182 ACCCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCGGGCTCGCTGC 8123 Query 63327 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 || || || || || ||||| |||||| || |||||| | | || || ||||||||| Sbjct 8122 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAGATGCCACGG 8064 Query 63386 TTCCAAGTATATGGCCATAACTCCAGG 63412 |||||||| ||||| | | | ||||| Sbjct 8063 CTCCAAGTAGATGGCAAAAGCCCCAGG 8037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629396417352720