Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq51860 98.7 1e-15 >seq51860 Length=4005 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || || ||||| || ||| || |||| || | ||||| ||||| || || Sbjct 3455 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGCC 3513 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| ||||||| | ||||||||||| || || ||||| ||||| ||| || || Sbjct 3514 AGCAAAGATCAGCCTCTGCTGATCGGGGGGGATACCTTCCTTGTCCTGGATCTTGGCCTT 3573 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| ||||||| || || | ||| | |||||||| |||| || Sbjct 3574 CACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCAGTCAGGGT 3633 Query 139747 TTTTACGAATATTTGCAT 139764 ||| || || || ||||| Sbjct 3634 TTTCACAAAGATCTGCAT 3651 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || || ||||| || ||| || |||| || | ||||| ||||| || || Sbjct 3227 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGCC 3285 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| ||||||| | ||||||||||| || || ||||| ||||| ||| || || Sbjct 3286 AGCAAAGATCAGCCTCTGCTGATCGGGGGGGATACCTTCCTTGTCCTGGATCTTAGCCTT 3345 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| ||||||| || || | ||| | |||||||| |||| || Sbjct 3346 CACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCAGTCAGGGT 3405 Query 139747 TTTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 3406 CTTCACAAAGATCTGCAT 3423 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | |||| || ||||| | || || || || || ||||| || ||| Sbjct 3652 GCCACCTCTCAGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 3711 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || |||| || | ||||| ||||| || |||||| ||||||| | ||||||||||| | Sbjct 3712 CAGGGTGCGTCCA-TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGG 3770 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||| ||||| ||| || || | | || | ||||| ||||||| | Sbjct 3771 GGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAA 3830 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | ||| | ||||| || || | || || ||||| || ||||| Sbjct 3831 CTTCCAGGGTAATGGTCTTACCAGTTAGGGTCTTCACGAAGATCTGCAT 3879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495732263400800