Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16]
53,499 sequences; 1,062,961,556 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq26544 132 6e-26
seq43608 120 4e-22
seq36225 102 1e-16
>seq26544
Length=14703
Score = 132 bits (146), Expect = 6e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 8178 CCTCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 8237
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||||||||||| ||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 8238 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 8297
Query 42207 CAATAAGTCTCTCTCC 42222
||| | |||||| ||
Sbjct 8298 CAACCACTCTCTCACC 8313
>seq43608
Length=19049
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| || || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 3257 CCTCATCTCTGCTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3198
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| |||||||| ||||| ||||| || |||||||||||||||||||| ||||| ||||| |
Sbjct 3197 TCAGCCAAAAAATAGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3138
Query 42207 C 42207
|
Sbjct 3137 C 3137
Score = 98.7 bits (108), Expect = 1e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376
|| ||| |||||||| || || || || | |||||| |||||||||||||| ||||||
Sbjct 950 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTT 891
Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430
|| ||||| ||||| || || |||||||| | || || || || |||||||||
Sbjct 890 TCCATGGCAATCTGGAAACCATAGAAACAACGAGCTTCTGTGACTTGTACTTCT 837
Score = 91.5 bits (100), Expect = 2e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818
||||| |||||||| | || |||||||||||||| || || || ||||| ||||| |||
Sbjct 4508 GACATGACTCCCATCCTCTGATATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCT 4449
Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853
|||| || || || |||||||| ||||| |||||
Sbjct 4448 TCCAGAGAGATGTTCTCCATGAAGTCAAAAGGATT 4414
>seq36225
Length=28417
Score = 102 bits (112), Expect = 1e-16
Identities = 125/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| ||||| || ||||| || || |||||| |||| | || ||||| ||||| || |
Sbjct 17208 TCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCGGCGATGTGGATGT 17149
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
| | ||||| || ||||||||||| ||||| ||||| || ||||| || | ||| || |
Sbjct 17148 TGAGAGACTGGCTCTGATCGATGAAAGCTCCTCTGTCCGCTGCCATCTTGAGGATGGTTT 17089
Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038
| || | || ||||| | || ||||| | |||| | || || ||||
Sbjct 17088 TCTGGGAGATCTCCCACACTGTCTTATAGAGCTGCTTCAAGTCATCAGGAA 17038
Score = 93.3 bits (102), Expect = 6e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
|||| || | ||| |||||||||||||| || || || ||||| || ||||| || || |
Sbjct 1276 CACTGAAGACTTTCTTTGTTTCCTTGTGCAGGTTGGACACGGCGATCCTGGCCGCCAGGA 1217
Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880
|||| || || || || | || || ||||| ||| | || || ||||| |||||||
Sbjct 1216 TGGCGTAGTCGGGGTGCTTGGTGGTCAGGGTGGCGGCTGTCTCGGCAGCCAGCGTGTCCA 1157
Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926
|| ||||| || || || | || | || || || ||||||||
Sbjct 1156 GCTCCACCGTGGTGACGCCGCTGTACAGCCCCTGAATCACCTTCAT 1111
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
|| || ||||| ||||||||||| ||||| || || | || || |||| || || |||
Sbjct 8182 ACCCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCGGGCTCGCTGC 8123
Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140
|| || || || || ||||| |||||| || |||||| | | || || |||||||||
Sbjct 8122 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAGATGCCACGG 8064
Query 72141 TTCCAAGTATATGGC 72155
|||||||| |||||
Sbjct 8063 CTCCAAGTAGATGGC 8049
Score = 87.8 bits (96), Expect = 2e-12
Identities = 126/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440
|||| || || || ||||||| | | ||| |||||||| || || || || || || |
Sbjct 13046 CATAGGTTTCATAGGGTCCTTGCTCCTTGGCCAGTTCACAGCTGGCTTCCAAAGCGCCGT 12987
Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500
|||||||||| || ||||||| || || | ||||| || ||||| ||||| ||
Sbjct 12986 AATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGTGCCTCGGGGCTCTCAAAGGGGA 12927
Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTG 71558
| | | ||| || || ||||| || | || || ||||| || ||||| || | |||
Sbjct 12926 ACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGGGCGGTG 12869
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670690384049240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |