Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16]
53,499 sequences; 1,062,961,556 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq16767 163 7e-35
seq51860 150 4e-31
seq43608 116 9e-21
seq26544 113 1e-19
seq40465 96.9 8e-15
>seq16767
Length=29411
Score = 163 bits (180), Expect = 7e-35
Identities = 134/163 (82%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|| ||||||||||||||| ||||||||||||| || || | ||||| | |||||||||
Sbjct 18379 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAGTATTTGGATACAGTATTCTTCATC 18438
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
|| | ||||||||||| ||||| ||||| || ||||| ||||| ||||| || |||||
Sbjct 18439 CTGAGGAAGAAATTTAACCAAATCAGTTTCCTGCATGTCTATCACCATTTCACCATGTTC 18498
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|| ||| | ||||| |||||||||||| | ||||| |||||||
Sbjct 18499 ACGTTGTGGTGGATTGGTATTAAATGGGTTGCAGGTGGACAAG 18541
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 78782 CAATTTCATATAGCTATAGGACATACTGCTATGTCTATCTATATAGATTGTCCTTATCCA 78841
|| || ||| | |||| || || || || ||||||| ||||| |||||||||| ||
Sbjct 21746 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 21805
Query 78842 CGATGGGTGCAATGGGCTGTAATTATATACGCGGTTACTTTTATTATTTTGTTCGGTAAC 78901
|||| |||| |||| ||| ||| | || || || || || ||| | | |||||||||
Sbjct 21806 AAATGGATGCACTGGGGTGTCATTTTCTATGCTGTCACCTTCATTTTCCTCTTCGGTAAC 21865
Query 78902 TTTTACTTCCGTACATATAAG 78922
|| |||| || |||||||||
Sbjct 21866 TTCTACTATCGGACATATAAG 21886
>seq51860
Length=4005
Score = 150 bits (166), Expect = 4e-31
Identities = 173/233 (74%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | || || | || | || ||||| ||||| || || |||||
Sbjct 3650 ATGCCACCTCTCAGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCG 3709
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| || || || |||||||| || |||||||| ||||| ||
Sbjct 3710 GACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGG 3769
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||| ||||| || || ||||| || | ||| || || || ||
Sbjct 3770 GGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCA 3829
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|| || || ||||| ||||||||||| || || || || || |||||||||||
Sbjct 3830 ACTTCCAGGGTAATGGTCTTACCAGTTAGGGTCTTCACGAAGATCTGCATTTT 3882
>seq43608
Length=19049
Score = 116 bits (128), Expect = 9e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|||||| | |||| |||||||| || || ||||| || |||||||| || ||||||||
Sbjct 3122 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 3181
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
|||| |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| |
Sbjct 3182 TCTATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTT 3241
Query 269246 ATAAGCAGGGACGA 269259
|| ||||| || ||
Sbjct 3242 ATCAGCAGAGATGA 3255
>seq26544
Length=14703
Score = 113 bits (124), Expect = 1e-19
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| ||||||
Sbjct 8301 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 8242
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
||||||| || ||||| ||||| ||| | |||||||| || ||| | || ||||| ||
Sbjct 8241 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTCATTAGCAGAGAT 8182
Query 269258 GA 269259
||
Sbjct 8181 GA 8180
>seq40465
Length=31615
Score = 96.9 bits (106), Expect = 8e-15
Identities = 124/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 238598 TTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTG 238657
|||| ||||| | |||||||| ||||| |||||| | ||| | |||||||| ||
Sbjct 2472 TTCCCCCCAGCTTCAAATGGTCCTGGAGGGCAAGATGCATGGCTTCCTGCGAATGTACTG 2531
Query 238658 GGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGTATTTA 238717
||| || ||||| || || |||||| | || || |||| || || | | | || ||
Sbjct 2532 GGCCAAGAAGATCCTGGAGTGGACTCGCTCCCCCGAGGAGGCCCTGCGGTTTGCCATCTA 2591
Query 238718 TCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGG 238768
|| ||||| ||||| || ||||| | |||||| ||||||||||||||
Sbjct 2592 CCTCAACGACCGCTACGAGCTGGACGGGAGGGATCCCAACGGATACGTAGG 2642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150609167130292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |