Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq16767 163 7e-35 seq51860 150 4e-31 seq43608 116 9e-21 seq26544 113 1e-19 seq40465 96.9 8e-15 >seq16767 Length=29411 Score = 163 bits (180), Expect = 7e-35 Identities = 134/163 (82%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| || || | ||||| | ||||||||| Sbjct 18379 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAGTATTTGGATACAGTATTCTTCATC 18438 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 18439 CTGAGGAAGAAATTTAACCAAATCAGTTTCCTGCATGTCTATCACCATTTCACCATGTTC 18498 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||||||| | ||||| ||||||| Sbjct 18499 ACGTTGTGGTGGATTGGTATTAAATGGGTTGCAGGTGGACAAG 18541 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78782 CAATTTCATATAGCTATAGGACATACTGCTATGTCTATCTATATAGATTGTCCTTATCCA 78841 || || ||| | |||| || || || || ||||||| ||||| |||||||||| || Sbjct 21746 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 21805 Query 78842 CGATGGGTGCAATGGGCTGTAATTATATACGCGGTTACTTTTATTATTTTGTTCGGTAAC 78901 |||| |||| |||| ||| ||| | || || || || || ||| | | ||||||||| Sbjct 21806 AAATGGATGCACTGGGGTGTCATTTTCTATGCTGTCACCTTCATTTTCCTCTTCGGTAAC 21865 Query 78902 TTTTACTTCCGTACATATAAG 78922 || |||| || ||||||||| Sbjct 21866 TTCTACTATCGGACATATAAG 21886 >seq51860 Length=4005 Score = 150 bits (166), Expect = 4e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | || | || ||||| ||||| || || ||||| Sbjct 3650 ATGCCACCTCTCAGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCG 3709 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||||||| ||||| || Sbjct 3710 GACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGG 3769 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 3770 GGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCA 3829 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || ||||| ||||||||||| || || || || || ||||||||||| Sbjct 3830 ACTTCCAGGGTAATGGTCTTACCAGTTAGGGTCTTCACGAAGATCTGCATTTT 3882 >seq43608 Length=19049 Score = 116 bits (128), Expect = 9e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || |||||||| Sbjct 3122 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 3181 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 |||| |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| | Sbjct 3182 TCTATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTT 3241 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 3242 ATCAGCAGAGATGA 3255 >seq26544 Length=14703 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 8301 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 8242 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||| | |||||||| || ||| | || ||||| || Sbjct 8241 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTCATTAGCAGAGAT 8182 Query 269258 GA 269259 || Sbjct 8181 GA 8180 >seq40465 Length=31615 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 238598 TTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTG 238657 |||| ||||| | |||||||| ||||| |||||| | ||| | |||||||| || Sbjct 2472 TTCCCCCCAGCTTCAAATGGTCCTGGAGGGCAAGATGCATGGCTTCCTGCGAATGTACTG 2531 Query 238658 GGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGTATTTA 238717 ||| || ||||| || || |||||| | || || |||| || || | | | || || Sbjct 2532 GGCCAAGAAGATCCTGGAGTGGACTCGCTCCCCCGAGGAGGCCCTGCGGTTTGCCATCTA 2591 Query 238718 TCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGG 238768 || ||||| ||||| || ||||| | |||||| |||||||||||||| Sbjct 2592 CCTCAACGACCGCTACGAGCTGGACGGGAGGGATCCCAACGGATACGTAGG 2642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150609167130292