Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq37467 123 2e-23 seq24048 82.4 5e-11 >seq37467 Length=38624 Score = 123 bits (136), Expect = 2e-23 Identities = 141/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||||||| |||| |||||||| || | |||||||||||| || ||||| || || ||||| Sbjct 1603 CATGTCCTTGTAGTCTGCTCCAAAGTGCCTCCACTGGAAGCCATACACTGGCCCCAGGTC 1544 Query 25833 TCCATCTTCCCTGT-GCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || || |||||| ||| || |||| ||| |||| || || | ||| || || |||| Sbjct 1543 CCCCTCCTCCCTGGAGCTGAA-GCCCTGCTTGTCCAGGAACTCCCGGGACCCGTTAGCGT 1485 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 25951 |||||||||| || || || | |||||||| |||| ||||| || || || || || | Sbjct 1484 CCCAGATCTTCACACCTTTTGCAGAGAGCTCCTTGGCATTTGTAGAGCC-CT-ACAAAAC 1427 Query 25952 ACAG 25955 |||| Sbjct 1426 ACAG 1423 Score = 123 bits (136), Expect = 2e-23 Identities = 129/168 (77%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 25488 TCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAG 25547 || ||||| || | || || |||||||| ||||| || |||||||||| ||||| ||| Sbjct 3635 TCCAGCCCTGTGATGTGGGCAATCATGTAGGTGAGCAGTGAGTAGCTGGCAATGTTGAAG 3576 Query 25548 GGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTC 25607 || || || | ||||||||||| ||||||||||||||||| || ||||| || | | Sbjct 3575 GGCACTCCCAGTCCCATGTCCCCA-GACCTCTGGTAGAGCTGGCAGGAGAGTTCACCCTT 3517 Query 25608 GCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 |||||| ||||| |||| || || |||||| || ||||| || || Sbjct 3516 CAGCACGTAGAACTGGCACAGGGCGTGGCACGGGGGCAGAGCCATCAG 3469 >seq24048 Length=19116 Score = 82.4 bits (90), Expect = 5e-11 Identities = 110/143 (77%), Gaps = 10/143 (7%) Strand=Plus/Plus Query 44408 GGCGACAAGTTTGC--GTCGTTCACGGCGCAAAAGGGGACATGCGGAGCCGTC-CTGACC 44464 || ||||||||||| | ||| ||||| || ||||| | | | ||||| | ||| || Sbjct 17442 GGAGACAAGTTTGCCAGCCGT-CACGGA-CAGAAGGGTA--TCCTGAGCCAGCTCTGGCC 17497 Query 44465 CA-GGAGGACATGCCCTTCGACA-AAAACGGGGTGGTGCCCGACCTCATCATCAACCCCC 44522 |||||||||||||||| ||| | ||||| |||| || ||| || || ||||||||| Sbjct 17498 AGTGGAGGACATGCCCTTC-ACAGAGAACGGCATGGTCCCAGACATCCTCTTCAACCCCC 17556 Query 44523 ACGCCTTTCCCTCCAGGATGACC 44545 ||| |||||||||| | |||||| Sbjct 17557 ACGGCTTTCCCTCCCGCATGACC 17579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339915823800927