Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq5532 159 5e-34 seq51733 98.7 1e-15 >seq5532 Length=36385 Score = 159 bits (176), Expect = 5e-34 Identities = 232/325 (71%), Gaps = 6/325 (2%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| |||| || ||||| ||||| || ||| |||| || ||| | | ||| Sbjct 5255 GGAAAGCGGTGAAGGGACAGCCTTTCACATTGTGGCAGATGAGCTTCTGTAAGGAGGCAG 5196 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| ||| |||| ||||| | || || |||||||| || ||||| || | |||| Sbjct 5195 TATTGATGATGTCAAAGCCCACTTTCCCACCAAAGGTGCTAGGCTTCCAATACTCTGGGG 5136 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| | || |||| || ||||| ||||| ||||| || || | ||| | ||| Sbjct 5135 AGCAGATGGCATTTCCCATCAGTCCTTTCAGGGAGAACGGCGCTCCAATCTCCACCATGG 5076 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | ||||| ||||| || || || |||||||| || | | || | ||||| ||||| Sbjct 5075 TTTCACCAAAGATAGCACCTGGTCGTGGCTTTTCTACGAGAAGACCTGGGTACAGCTCCA 5016 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 5015 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 4956 Query 8978 TTATTAAT---AAAAATA--AAATG 8997 ||||| || ||||||| ||||| Sbjct 4955 TTATTGATGAGAAAAATAGTAAATG 4931 Score = 125 bits (138), Expect = 1e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| | || || || ||||| || || ||| ||| || ||||| || ||||||| Sbjct 3250 ATGAGCCTGGTAGTTTGGAACAGCTGCTCATCATCCCACTCAGGATGCTCCTGTTTCAGG 3191 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || ||||| |||||||| | || || Sbjct 3190 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 3131 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || |||| | ||| | ||| || || | ||||| Sbjct 3130 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGTACATGAGGAGGG 3071 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || |||| || ||||||||||| || ||||| ||| Sbjct 3070 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 3011 Query 9862 TG 9863 || Sbjct 3010 TG 3009 Score = 96.9 bits (106), Expect = 5e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || ||||| || || || || || || || | |||| ||| Sbjct 1396 ACCTTTAACACCCATCGGTGTTGGGCAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 1337 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 ||||||||| ||||| |||||||||||||| ||| | ||| || |||||| | || Sbjct 1336 ATAGGAGAGGTTGGAATAAGCTTCCCAGCTTTTGTAATTGTAATCACTGTTGTATGTTGG 1277 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAAG 10449 |||||||||||||| | ||||| ||||| ||| |||| Sbjct 1276 TGGGCTGTCAATCAAGTGGGATCGTGCTGAAAAAGAGAAAG 1236 >seq51733 Length=8811 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||| || || || ||||| |||||||| | |||| Sbjct 8409 TCTTAACTATCTCAAAGCCAGTTGCTCCACCAAACGTACTGGGCTTCCAGTACTCTGGGG 8468 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||| ||||| || | ||| | |||| Sbjct 8469 AGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGC 8528 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| |||| || || | || || || | || ||||||| Sbjct 8529 TTTCCCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGATAAAACTCCA 8588 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 8589 GAGCATCAATGTCTCCATAGAG 8610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708050982896560