Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq51860 120 2e-22 seq34372 107 1e-18 seq41730 104 2e-17 seq26925 100 2e-16 seq4542 96.9 2e-15 >seq51860 Length=4005 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||||||||||| ||||| ||| | ||| |||||| |||||| || || ||||| || Sbjct 3194 TTACCACCTCTCAGACGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 3253 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||| ||| | || || | || || || ||||| || || | || ||||||| | Sbjct 3254 GACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGG 3313 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| ||||| |||||| || || ||||||||||| | || || | ||| Sbjct 3314 GGGATACCTTCCTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCA 3373 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| | || || || || || |||| ||| ||||| || ||||||||| Sbjct 3374 ACTTCCAGGGTGATTGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3424 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| |||| |||||| || || ||| ||||| || || ||||| || ||| Sbjct 3653 CCACCTCTCAGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3712 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || || || ||||| || || | || ||||||| |||| Sbjct 3713 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGG 3772 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || ||||||||||| || || || | |||||| Sbjct 3773 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACT 3832 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | ||||| || ||||| || | ||| |||||||| |||||||| ||| Sbjct 3833 TCCAGGGTAATGGTCTTACCAGTTAGGGTCTTCACGAAGATCTGCATTTTT 3883 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| |||| ||| | ||| |||||| |||||| || || ||||| || ||| Sbjct 3425 CCACCTCTCAGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3484 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || || || ||||| || || | || ||||||| |||| Sbjct 3485 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGG 3544 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || ||||||||||| || || || | |||||| Sbjct 3545 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACT 3604 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||| ||||||||| || ||||||||| Sbjct 3605 TCCAGGGTGATTGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 3652 >seq34372 Length=426 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 382 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATCGGTCTCGT 323 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 322 GCCGGTATTTAGCCTTA 306 >seq41730 Length=1565 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||| |||||||||||||| |||||||| || || || ||| |||| Sbjct 666 AAGCCCGTTCCCTTCGCTGTGGTTTCGCTGGATAGTAGGTACGGACAGCGGGAATTTCGT 725 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || |||||||||||||||||| Sbjct 726 TCATCCATTCATGTGCATCACTAATTAGATGACGA 760 >seq26925 Length=1007 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| || ||||||||||||||||||| || |||||||| ||||| || |||||||| Sbjct 762 AAGGCCATTCCCTTGGCTGTGGTTTCCCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 703 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| |||||||||||||||| || Sbjct 702 TCATCCATTCATGCATGTCACTAATTAGATGATGA 668 >seq4542 Length=42722 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/93 (83%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||| ||| | |||||| ||||| || ||||| || Sbjct 41919 AAGCCTGTTCCCTTGGCTGTGGTTTTGCTGGGTAGTAGGTAGGGACAGTGGGAATCTTGT 41978 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||| || |||||||||||||||| Sbjct 41979 TCATCCATTCATGTGCTTCACTAATTAGATGAC 42011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334728808040669