Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq51860 170 4e-37 >seq51860 Length=4005 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||||||| || ||||| || || |||||||| || ||||| || || | Sbjct 3662 AGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 3721 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || ||||| || || |||||| Sbjct 3722 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATACCTTCC 3781 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || |||||||||||| | || ||||||| ||| Sbjct 3782 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTA 3841 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||||| ||||| ||||||||| Sbjct 3842 ATGGTCTTACCAGTTAGGGTCTTCACGAAGATCTGCATT 3880 Score = 150 bits (166), Expect = 3e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || |||||||| || |||||||| || ||||| || || | Sbjct 3434 AGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 3493 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || ||||| || || |||||| Sbjct 3494 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATACCTTCC 3553 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || |||||||||||| | || ||||||| |||| Sbjct 3554 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTG 3613 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || ||||| || || || |||||||| Sbjct 3614 ATTGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 3651 Score = 147 bits (162), Expect = 4e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || ||||| || || | |||||||| | Sbjct 3216 CAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCA 3275 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || || || || || ||||| || || ||||||||||| || | Sbjct 3276 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATACCTTCCTTGTCCTGGA 3335 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||| || ||| |||||||| | || ||||||| |||||| || || | Sbjct 3336 TCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATTGTCTTGC 3395 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || |||||||| || || |||||||| Sbjct 3396 CAGTCAGGGTCTTCACAAAGATCTGCAT 3423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921006076540280