Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq36225 140 6e-28 seq26544 96.9 7e-15 >seq36225 Length=28417 Score = 140 bits (154), Expect = 6e-28 Identities = 127/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| || | ||||||||| || ||||||||||||||||| ||||||||||||| Sbjct 9974 CCACCTCATCTTTGCTGGTGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGG 9915 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| |||| |||||||| |||||||||||||||| |||| Sbjct 9914 TGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 9855 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 ||||||||| ||| | ||| || | || |||||| Sbjct 9854 TGCCGGTCTCGGTCTGCGACTCGATGATGGCGTACCAGAG 9815 Score = 127 bits (140), Expect = 4e-24 Identities = 169/231 (73%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 244321 CCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT 244380 ||| |||||||| || ||||| ||||| ||||| || | || |||||| | Sbjct 13069 CCCTTTGCTGACAGGAGACCCCTCATAGGTTTCATAGGGTCCTTGCTCCTTGGCCAGTTC 13010 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 |||||| | || | ||| |||| || |||||||| || ||| || ||||| | ||| Sbjct 13009 ACAGCTGGCTTCCAAAGCGCCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAAG-CGCT 12951 Query 244441 G-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499 | |||| | || ||||||| | ||| | |||||| |||||||||| ||||||| Sbjct 12950 GTGCCTCGGGGCTCTCAAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCA 12891 Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG-CTTCGGGC 244549 |||||||||||||||| | ||| ||| ||||||||||| || || ||||| Sbjct 12890 CGCCGATGCCGATGGGGCGGTGCCGCCTGTTGGAGCGCTCGGCCTGCGGGC 12840 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || || || | ||| ||||| ||||||| || ||||||||| Sbjct 14786 ACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATG 14727 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 || |||||||||| ||||| || ||| || || |||||||| || | || || Sbjct 14726 GATTCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCTGTTGGCATGGGTGAAATGAGGAGG 14667 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 |||||||| || |||| ||| Sbjct 14666 CTGTTCCTGACACCGTACCT 14647 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| || ||||||||| || |||||||||||||| ||| ||||| | || | |||| Sbjct 8182 ACCCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCGGGCTCGCTGC 8123 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || || |||||||||||| | | || | || ||||||| ||| | ||||| ||| Sbjct 8122 TCTTCTTTCCCAGTGTTCTTCTTTAAGTCAAGGAACTCAAAGATGTCCAGATGCCACGGC 8063 Query 245123 TCCATGTAGA 245132 |||| ||||| Sbjct 8062 TCCAAGTAGA 8053 >seq26544 Length=14703 Score = 96.9 bits (106), Expect = 7e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 8313 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 8254 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||||| || ||||| || |||||| Sbjct 8253 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTC 8194 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 8193 ATTAGCAGAGATGAGG 8178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943707684964240