Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq51860 120 3e-22 seq36225 100 3e-16 >seq51860 Length=4005 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || ||||| || || || ||||| ||| || ||||| | Sbjct 3437 CGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA 3496 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||||||||| || || || |||||| Sbjct 3497 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATACCTTCCTTG 3556 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| |||||| | ||| ||||| | ||| | Sbjct 3557 TCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATT 3616 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| ||||| ||||| ||||||||| Sbjct 3617 GTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 3652 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || ||||| || || || ||||| ||| || ||||| | Sbjct 3209 CGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA 3268 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||||||||| || || || |||||| Sbjct 3269 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATACCTTCCTTG 3328 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | ||| ||||| | ||| | Sbjct 3329 TCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATT 3388 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 3389 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3424 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | || || || || || || ||||| ||| || ||||| | Sbjct 3665 CGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA 3724 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||||||||| || || || |||||| Sbjct 3725 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATACCTTCCTTG 3784 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| |||||| | ||| ||||| | ||| | Sbjct 3785 TCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTAATG 3844 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || || || || || |||||||| Sbjct 3845 GTCTTACCAGTTAGGGTCTTCACGAAGATCTGCAT 3879 >seq36225 Length=28417 Score = 100 bits (110), Expect = 3e-16 Identities = 102/132 (77%), Gaps = 6/132 (5%) Strand=Plus/Minus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| ||| ||||||| |||||||||||||||||||||| |||||| || | ||||| Sbjct 9954 TACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTG 9895 Query 146740 CTAAACTTG---TTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTG 146796 || |||| ||||||| |||||||||||||||||| || ||||| ||| | Sbjct 9894 CT---CTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCGGTCTCGGTCTGC 9838 Query 146797 GTCTCGACGATG 146808 | ||||| |||| Sbjct 9837 GACTCGATGATG 9826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475182814783760