Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq5532 163 4e-35 seq51733 100 4e-16 >seq5532 Length=36385 Score = 163 bits (180), Expect = 4e-35 Identities = 216/297 (73%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| |||| || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 5255 GGAAAGCGGTGAAGGGACAGCCTTTCACATTGTGGCAGATGAGCTTCTGTAAGGAGGCAG 5196 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | |||||| || || || | ||| || |||||||| || ||||| ||| | |||| Sbjct 5195 TATTGATGATGTCAAAGCCCACTTTCCCACCAAAGGTGCTAGGCTTCCAATACTCTGGGG 5136 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| | || |||| || ||||||| ||| ||||| || || | ||| | ||| Sbjct 5135 AGCAGATGGCATTTCCCATCAGTCCTTTCAGGGAGAACGGCGCTCCAATCTCCACCATGG 5076 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGAGTTCG 9118 | ||||| ||||| ||||| || || || ||||| |||| |||| || | ||| || || Sbjct 5075 TTTCACCAAAGATAGCACCTGGTCGTGGCTTTTCTACGA-GAAGACCTGGGTACAGCTCC 5017 Query 9119 ACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 | ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 5016 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 4960 Score = 145 bits (160), Expect = 1e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||| |||| |||||| ||| |||| || || || || ||||| || | || ||| Sbjct 3241 GTAGTTTGGAACAGCTGCTCATCATCCCACTCAGGATGCTCCTGTTTCAGGATGTCACAG 3182 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 |||| ||||||||| ||||||||||| || || |||||||| || || || || |||||| Sbjct 3181 ACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGGACCAAACCA 3122 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | ||| || | ||| |||| | || || || | || | || | ||| Sbjct 3121 AACACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGTACATGAGGAGGGTAGATCATC 3062 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | |||| || || || || || || ||||||||||| || ||||| | ||| Sbjct 3061 TCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATCTG 3009 Score = 89.7 bits (98), Expect = 7e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| |||| ||||| | ||||||| || |||| ||||| ||||| ||| | Sbjct 535 CTTACGTGTCGTACAGTTCTCCCCATAAAATCCAGTCCTTGTACAGTCGCATTCATACTG 476 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 |||||| || ||||||||||| |||| ||||| || |||| || ||||||||||| Sbjct 475 ATCAAATCCTGTTGTCATGCATACTCCTCTGTTCTGACAGGGGTTTGAGCAGCAAGGGTT 416 Query 10960 GGCT 10963 |||| Sbjct 415 GGCT 412 >seq51733 Length=8811 Score = 100 bits (110), Expect = 4e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 || || || || ||||| ||||||||| | |||||||||||| ||| | | ||||| Sbjct 8435 CCACCAAACGTACTGGGCTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAAAAGCCCC 8494 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||| ||||| || | ||| | ||||| || || || || || ||| | Sbjct 8495 TTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAATACCATTGGGTTGG 8554 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| | || | || | ||| || | ||| |||||||| || Sbjct 8555 GGTTTCTCAAGCAGCAAGCCTGGATAAAACTCCAGAGCATCAATGTCTCCATAGAGCTCT 8614 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||| ||| || || |||| | ||| ||| Sbjct 8615 TCCAGCTCTGCCGCCTTCTCTTCCTCTCCT 8644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723244015946600