Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq37467 161 8e-35 seq48655 100 2e-16 >seq37467 Length=38624 Score = 161 bits (178), Expect = 8e-35 Identities = 136/167 (81%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 29866 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 29925 || ||||| |||| ||| || |||||||| ||||| || ||||||||||| ||||| ||| Sbjct 3635 TCCAGCCCTGTGATGTGGGCAATCATGTAGGTGAGCAGTGAGTAGCTGGCAATGTTGAAG 3576 Query 29926 GGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCG 29985 || || || || ||||||||||| ||||||||||||||||| || ||||| || || | Sbjct 3575 GGCACTCCCAGTCCCATGTCCCCAGACCTCTGGTAGAGCTGGCAGGAGAGTTCACCCTTC 3516 Query 29986 CTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 |||||| ||||| |||| || ||||||||| || |||||||| || Sbjct 3515 AGCACGTAGAACTGGCACAGGGCGTGGCACGGGGGCAGAGCCATCAG 3469 Score = 150 bits (166), Expect = 1e-31 Identities = 147/184 (80%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||||| |||| |||||||| || |||||||||||||| || ||||| || |||||||| Sbjct 1603 CATGTCCTTGTAGTCTGCTCCAAAGTGCCTCCACTGGAAGCCATACACTGGCCCCAGGTC 1544 Query 30210 TCCCTCTTCCCTGT-GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||||| |||||| ||| ||||||| |||||||| || || | ||| ||||| |||| Sbjct 1543 CCCCTCCTCCCTGGAGCT-GAAGCCCTGCTTGTCCAGGAACTCCCGGGACCCGTTAGCGT 1485 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||||||||| || || || | |||||||| |||| ||||| || || || || || | Sbjct 1484 CCCAGATCTTCACACCTTTTGCAGAGAGCTCCTTGGCATTTGTAGAGCC-CT-ACAAAAC 1427 Query 30329 ACAG 30332 |||| Sbjct 1426 ACAG 1423 >seq48655 Length=27788 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || |||||||||||||| |||| ||||| |||||| | | ||| | |||||| || || Sbjct 25035 TTGAGCTCCCTGCTGAGTACTATATTTATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 25094 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || ||| |||||||||||| ||||||| || ||| Sbjct 25095 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCGTTCTGTTTACCT 25142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408351173535527