Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq30680 100 2e-15 seq51860 87.8 1e-11 >seq30680 Length=3589 Score = 100 bits (110), Expect = 2e-15 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 476089 AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGC 476148 ||||||||| |||||||||||||| || ||||| |||||||| || || ||||||||||| Sbjct 584 AGGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTCGATATTGATGC 525 Query 476149 AAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 |||||||| || ||||| ||||| ||||| Sbjct 524 CAATGGTATCCTGAATGTGTCTGCTGTGGATAA 492 >seq51860 Length=4005 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || | || ||||| || || || |||||||| Sbjct 3724 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATACCTTCCTT 3783 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| || ||| || || || ||| || | | ||| |||||||| Sbjct 3784 GTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTAAT 3843 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || ||||| ||||| || || Sbjct 3844 GGTCTTACCAGTTAGGGTCTTCACGAAGATCTG 3876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265884368312852