Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq51860 89.7 1e-12 seq43608 89.7 1e-12 >seq51860 Length=4005 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 |||||||||| ||||| | || | ||| | ||| | ||| || ||| || || || | Sbjct 3195 TACCACCTCTCAGACGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 3254 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | || ||| |||| |||| || || ||||||||||| | ||||| ||||| || | Sbjct 3255 ACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGG 3314 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| || || || || ||| || ||||| || | || | || | Sbjct 3315 GGATACCTTCCTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 3374 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| || || || || || ||||| | || || | ||| |||||||| Sbjct 3375 CTTCCAGGGTGATTGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3423 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || || || | || | || || ||| || || || Sbjct 3650 ATGCCACCTCTCAGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCG 3709 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| |||| || || ||||||||||| | ||||| ||||| || Sbjct 3710 GACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGG 3769 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || || ||||| || | || | || Sbjct 3770 GGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCA 3829 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || |||||||| |||||||||| || || | || ||||||||||| Sbjct 3830 ACTTCCAGGGTAATGGTCTTACCAGTTAGGGTCTTCACGAAGATCTGCATTTT 3882 >seq43608 Length=19049 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 49860 ATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATT 49919 |||| ||||||| |||||| | ||| |||||||||||||| || || |||||||| || Sbjct 3243 ATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTCAGCCAAAAAATA 3184 Query 49920 GATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTA 49971 ||||||||| | ||||||||| || || || || ||||| |||| || Sbjct 3183 GATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCTACTA 3132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983805182338650