Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq49771 179 5e-39 seq51126 176 5e-38 seq47488 176 5e-38 seq44154 176 5e-38 seq4553 138 1e-26 seq36225 134 2e-25 seq43608 104 3e-16 >seq49771 Length=28735 Score = 179 bits (198), Expect = 5e-39 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 14509 GCTTGGCCAGCTCCCCCGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 14568 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 14569 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 14628 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 14629 TGTCGTTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 14688 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||| ||||| ||||||| Sbjct 14689 GCACCTGCTTCAGCACTTTGTAGA 14712 >seq51126 Length=8989 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 8351 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 8410 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 8411 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 8470 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 8471 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 8530 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 8531 GCACCTGCTTCAGCACCTTGTA 8552 >seq47488 Length=1123 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 291 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 350 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 351 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 410 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 411 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 470 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 471 GCACCTGCTTCAGCACCTTGTA 492 >seq44154 Length=1721 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 1013 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1072 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 1073 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 1132 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1133 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1192 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1193 GCACCTGCTTCAGCACCTTGTA 1214 >seq4553 Length=6585 Score = 138 bits (152), Expect = 1e-26 Identities = 132/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1254376 CGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGC 1254435 |||| ||| |||| || |||| | ||| || ||||||||| |||||||||| || Sbjct 5840 CGGCCGTCAGGATGTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCG 5781 Query 1254436 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCG 1254495 ||||||| | ||||||| |||| |||||||| || ||||||||||||| ||| | Sbjct 5780 AGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCATGATGCCCATGG 5721 Query 1254496 ACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 |||| ||||||||| |||||||||||||||||| ||||||||||| Sbjct 5720 CCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 5672 >seq36225 Length=28417 Score = 134 bits (148), Expect = 2e-25 Identities = 131/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||||||||| |||||| || | | || |||||||||||||||||| | | Sbjct 9948 ACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTG 9889 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 ||||| || |||||||| |||||||||||| | |||||||||| |||||| | ||| | Sbjct 9888 CGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCGGTCTCGGTCTGCGACTCGATG 9829 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 ||||| |||||| ||| |||| ||| || |||||| ||||||| Sbjct 9828 ATGGCGTACCAGAGCTGCTGCGCCCTCACCACGCGCCGCGCCCGGCCCT 9780 Score = 102 bits (112), Expect = 1e-15 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||||||||| || || ||||||||||| ||||||||||| || || |||||||||||||| Sbjct 6503 GCCGATGCCACCCGCAGACTTGGAGATCAGCGCGCACTGCTTCAGGGTGTCGTAGATGCC 6444 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277 |||||| |||| |||||||| || || ||||| Sbjct 6443 CTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 6408 >seq43608 Length=19049 Score = 104 bits (114), Expect = 3e-16 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| || ||||||||||| |||||||||| ||| | | || Sbjct 118 CACCTCCTCCGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATCTGCCAGATATCGTG 59 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTCG 869944 ||| |||| ||||||| ||| |||||| ||||||||| |||| ||| || ||| Sbjct 58 GTACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTGTCCCGCAGCAGCGGCTCG 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102748821524183