Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq16373 190 2e-43 seq25551 134 2e-26 >seq16373 Length=23388 Score = 190 bits (210), Expect = 2e-43 Identities = 643/992 (65%), Gaps = 17/992 (2%) Strand=Plus/Minus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 |||||||| | |||||| || | ||| | || || || ||| ||| || ||| Sbjct 12306 TTATGTCGCAAATACTCTTCCAAACATTTAACTGCAAAAGGGTCGACATCCGTGTCAAAC 12247 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 ||||| ||||| | ||| || ||| || | ||| || || || || || || Sbjct 12246 TTGTTAGCGAAGAAGTGGTG---GTTTCGCAGCACCCAGTTCAGGTCTCCGACCCCAAAA 12190 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 || || || || || ||||| || || ||||| || || || | || || | | ||| Sbjct 12189 ACACAGACAGAACGAACGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACACG 12130 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| |||| |||||||| || ||||| | | || | |||||| || ||| Sbjct 12129 TCGCCCTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACGTCA 12070 Query 162307 TACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||||| |||| || || || || || || || | | | ||| || | || ||||| Sbjct 12069 TACTTGT-CACTAGAAGGAACTGCACCTGGGACTTCAGAGATTCTTTGAATTGTTGCCCA 12011 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 ||||| || ||||| || || || || || | |||||| ||||| | | | |||| Sbjct 12010 CAGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCGATGAATT---TAAGTATTTT 11954 Query 162426 ATCG---TATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGA 162482 | | || |||| || | |||| | || ||||| || || |||||||| Sbjct 11953 GCTGCTTTCTAATATGTGTTCTACAAATCTCCTGCTAACTATAAAATAGGCACTACCAGA 11894 Query 162483 AAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCC 162542 ||| | || | | | ||| || | | ||||||| || ||||| || | || Sbjct 11893 AAAAATTGGAGTACTGAGAGGTGGCAGTTGTTTGTCTATGCCTGTGTTCTTTATTTTACC 11834 Query 162543 CTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGT 162602 || || | | |||| || ||||||| | ||| | || | | ||| || Sbjct 11833 ATCAACAATCTCGTGGTGTTTTTTCCACCTTACTTCTTTATAAGCAGGCATTTTTTCTGT 11774 Query 162603 CTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGC-ACCATCTCTAGATTGGTCT 162661 ||||||||||| | || |||| ||| | | | ||||| || | ||||||| Sbjct 11773 TTCTAGACTGTTTA-AGCCTTTAAGGGCTTTTAATTTCTCTACCATTTCCTGGTTGGTCT 11715 Query 162662 TAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGT 162721 | | |||||||| |||| ||||| || || | |||||||| | || ||| || Sbjct 11714 TTATAGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTGCGAACTTCGTCTGT 11655 Query 162722 ACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGC 162781 | ||||| | | ||||| | ||| ||||| || | ||||| || || ||||| || | Sbjct 11654 AGAGATCTTTCATGCAGTTAATATCTGCCTGCACCCTGCTCCATGAAGCATACACAACAC 11595 Query 162782 TCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCA 162841 |||| | | ||| | |||||||| || ||||| || ||||| ||| | || || Sbjct 11594 TCTCTAGCTGGCTGGAAATGAAGACATTATCAAAACATGAGACTATTCCCTTGACAGCAG 11535 Query 162842 GTGAGAACA--TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGC 162899 | ||| || || | ||| | || || || | |||||| | |||||||||||| Sbjct 11534 CAAAAAACGATTCTGGA--GATTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGC 11477 Query 162900 GTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATA 162959 ||||| | || || | ||| || | |||||| || || || | ||||| || || || Sbjct 11476 ATAGATTGATCTTAGAAGTCTATCAAGCATCTCGATTTTGTGATAAACCACTATTGAGTA 11417 Query 162960 CGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGTCCCT 163019 || || || || || || || || | ||||||| | ||| |||| | | | | Sbjct 11416 AGCAATTGGAAATTCTGCTTCTTCACTGCTGAGAGGTTCCATAACGTACCTCCTAGTCTT 11357 Query 163020 CACAAACGCCGCACAGTCCTCCGTCATGTTAA 163051 || | |||||||| |||||||||||| Sbjct 11356 GGTGAAGGAGGCACAGTCTGCCGTCATGTTAA 11325 >seq25551 Length=85034 Score = 134 bits (148), Expect = 2e-26 Identities = 382/578 (66%), Gaps = 13/578 (2%) Strand=Plus/Minus Query 176975 CACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAG 177034 ||| || ||||||| |||| | || | ||| || || || || ||||| || | || || Sbjct 13563 CACATGTATGAAAGAGTCTGCTGGAATGTAGTTCTCATAGTTTTCTCTGGAAGGGCCCAG 13504 Query 177035 TACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCT 177094 ||| | ||||| | || |||| ||||| ||| ||||| || ||||| || || | Sbjct 13503 TACAACTGGTACTGATCCAGCCAGAAGAGCATTGTAAAGTTTCTCAGTAATGTAATCTTT 13444 Query 177095 GTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAG--GAAGATAGTAGCGGGATGAAG 177152 ||| | || || ||||| | || ||||||||||| | ||||||| | | || ||| Sbjct 13443 GTGGATTGAATTTTCAAAAGAAAGGTAGAATTTACAACTGGAGATAGTTG--GAATCAAG 13386 Query 177153 TCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTA 177212 | | ||| | ||| ||||| | | | ||||| ||| || || | || ||| Sbjct 13385 TTTTTATCATTGACATAGTCTCCAAAGGCTTGTCCGTAGGTATGGATTTCGACGTATTTG 13326 Query 177213 CTGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCA 177271 || ||||| ||| || || || || | || || |||||| || || || ||||| Sbjct 13325 CTAAGCTCATTGTAATA-CTTGACTCGAGCATGCTCAGGGTTCCAGTTACTAACAACCCA 13267 Query 177272 GCAAACTAACTTGCTCTTTGCGGGAACGGGATTCGATACTAATGCAGTGTCT-CTGAGCG 177330 || || || || ||| || || ||| | ||| | | | | | || | Sbjct 13266 ACATACCAAGTTTTCCTTACTTGGCAC----TTCAAATGTAAAGGAACCTGTACCGACCA 13211 Query 177331 TTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGA 177390 | | | ||||| ||||| |||||||| || || |||| ||| || | || || || | Sbjct 13210 TCATGAAGCCATAAGGCACCTGAATATCTGAATCACGTCGGTAAGTCAGGGTCAGGTTAA 13151 Query 177391 AAAGGTTTTCTATACCT-TGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCAT 177449 | |||| ||| || || | ||| || | | | | | || || || ||||||||||| Sbjct 13150 AGAGGTGTTCAATGCCACTCTTTTGTGGAG-TATGAGTTGGAGACTCCAAGTTCATCCAA 13092 Query 177450 ATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTTATC 177509 |||||||| || || | ||| |||| || | ||||| | || |||| || || Sbjct 13091 ATCCACTTCTGGAATGGTGGCCTGGCTTGCTGAGGTAAATTAGTCAGATCCCAGCTAATG 13032 Query 177510 TCTCTGTGGTGAAAGACTACGGCATTGGCTTTGTAATA 177547 |||||||| |||| || || |||| || ||||| ||| Sbjct 13031 TCTCTGTGATGAATGAGAACAGCATGGGATTTGTTATA 12994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578045180830400