Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq37467 178 2e-39 seq17929 82.4 9e-11 >seq37467 Length=38624 Score = 178 bits (196), Expect = 2e-39 Identities = 138/162 (85%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 || || || | |||||| | ||||||||||||||| ||||||||||| ||||||||||| Sbjct 3632 AGCCCTGTGATGTGGGCAATCATGTAGGTGAGCAGTGAGTAGCTGGCAATGTTGAAGGGC 3573 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTC-CCCGTCGGC 147104 || ||||| ||||||||||| ||||||||||| |||||||| ||||| || ||| || || Sbjct 3572 ACTCCCAGTCCCATGTCCCCAGACCTCTGGTAGAGCTGGCAGGAGAGTTCACCCTTCAGC 3513 Query 147105 CACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||| |||||||||||| ||||||||| ||||| ||||| Sbjct 3512 -ACGTAGAACTGGCACAGGGCGTGGCACGGGGGCAGAGCCAT 3472 Score = 107 bits (118), Expect = 2e-18 Identities = 118/156 (76%), Gaps = 6/156 (4%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||||||||||||||||||||| ||||||||||||||||| || || ||| Sbjct 1587 GCTCCAAAGTGCCTCCACTGGAAGCCATACACTGGCCCCAGGTCCCCCTCCTCCCTGGAG 1528 Query 147343 GAGAAGCCCGCCCGCTTG---AGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACT 147399 ||||| || ||||| || ||||| ||||||||| ||||||||||| ||| Sbjct 1527 CTGAAGC---CCTGCTTGTCCAGGAACTCCCGGGACCCGTTAGCGTCCCAGATCTTCACA 1471 Query 147400 CCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 || || || ||||||||||| | | || |||||| Sbjct 1470 CCTTTTGCAGAGAGCTCCTTGGCATTTGTAGAGCCC 1435 >seq17929 Length=28593 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 || ||| ||||| | | ||||| || | ||||| || || |||| |||| || Sbjct 4604 TATTCTTTGGTGGTGATATTTGGCCTCACAGGCAACCTGCTCGTTGTCCTCATCCTGGTA 4545 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || ||||||||||| | || |||||| |||||| |||| |||| ||||| || ||| Sbjct 4544 AAATACAAGAGGCTGAAGAGCATGACAGACATCTACCTGCTCAATCTGGCAATTTCTGAT 4485 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | || || | |||||||||||| Sbjct 4484 TTGCTGTTTATATTTTCTCTCCCCTTTTGG 4455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583097799693600