Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16]
53,499 sequences; 1,062,961,556 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq26544 89.7 6e-13
seq22476 86.0 7e-12
seq43608 84.2 2e-11
seq36225 82.4 8e-11
seq20606 82.4 8e-11
>seq26544
Length=14703
Score = 89.7 bits (98), Expect = 6e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| || || | || |||||||| || || | |||||||
Sbjct 8180 TCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 8239
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| |||||| || ||| |||||||| |||||||||||||| || ||||||||
Sbjct 8240 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 8299
Query 74892 AC 74893
||
Sbjct 8300 AC 8301
>seq22476
Length=20326
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|| ||||||||||| | |||||| | || || ||||| ||||| || ||||||||
Sbjct 11100 GTAAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCACCATGCAGCCTTGTGCCAAACTGA 11159
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||| ||| | |||||||||||| |||||| || |||||||| || || | |
Sbjct 11160 CCAATAGGCTGGAGCAAGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAAGTTAATA 11219
Query 152149 ATCGT 152153
|| ||
Sbjct 11220 ATGGT 11224
>seq43608
Length=19049
Score = 84.2 bits (92), Expect = 2e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521
||| ||||| || ||||| ||||| || |||||||| ||||||| ||||||||||||||
Sbjct 4488 ATATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCTTCCAGAGAGATGTTCTCCAT 4429
Query 74522 CCAGTCGAAAGGGTTCTTTGC 74542
|||| ||||| |||| |||
Sbjct 4428 GAAGTCAAAAGGATTCTCTGC 4408
>seq36225
Length=28417
Score = 82.4 bits (90), Expect = 8e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389
|||||||||||| || |||||||| ||| ||||| ||||||||||| || || |||
Sbjct 6405 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAG 6464
Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427
|||| || | |||||||||| ||||||| |||||
Sbjct 6465 CAGTGCGCGCTGATCTCCAAGTCTGCGGGTGGCATCGG 6502
Score = 82.4 bits (90), Expect = 8e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551
||| ||| | | || |||||||| || || || ||||||||| ||||||||||||| |
Sbjct 14667 CCTCCTCATTTCACCCATGCCAACAGCTTCCACTGCTCAGATCCTGGGCAACAACGAATC 14726
Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTT 55606
||||||| ||||| | |||||||||| ||| | ||| |||| ||||||
Sbjct 14727 CATCGAGCCCTACACCAGCAACATCTACACACGCAGAGTCCTCTCAGGAGAGTTT 14781
>seq20606
Length=19933
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| || |||| ||| ||||||||||| |||||| ||| | || || || ||
Sbjct 16669 GTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTGCCAAACTGA 16610
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | || | | || || | ||||| || |||||||| |||||||||||||||
Sbjct 16609 CCAATAGGTTGTAGCAGATTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 16550
Query 117425 ATCGT 117429
|| ||
Sbjct 16549 ATAGT 16545
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546850056140200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |