Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq51860 176 5e-39 seq36225 105 8e-18 >seq51860 Length=4005 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || || |||||| | || Sbjct 3423 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACAATCACCCTGGAAGTTGAGCCCAGT 3364 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||||||||| || ||||||||||| || || || || || ||| Sbjct 3363 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATCCCCCCCGATCAG 3304 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 3303 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 3244 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| || ||||||| | ||||| Sbjct 3243 ATCCAGAAGGAGTCCACTCTCCATCTTGTGCTGCGTCTGAGAGGTGG 3197 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || || || || |||||| | || Sbjct 3651 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACAATCACCCTGGAAGTTGAGCCCAGT 3592 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || ||||||||||| || || || || || ||| Sbjct 3591 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCCGATCAG 3532 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 3531 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 3472 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| || |||| || | ||||| Sbjct 3471 ATCCAGAAGGAGTCCACTCTCCATCTTGTGCTGCGCCTGAGAGGTGG 3425 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || || ||||| ||||| || || |||||| | | Sbjct 3880 AATGCAGATCTTCGTGAAGACCCTAACTGGTAAGACCATTACCCTGGAAGTTGAGCCCAG 3821 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| ||||||| || || ||||||||||| || || || || || || Sbjct 3820 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCCGATCA 3761 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 3760 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 3701 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || || | || |||| || | ||||| Sbjct 3700 CATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGCCTGAGAGGTGG 3653 >seq36225 Length=28417 Score = 105 bits (116), Expect = 8e-18 Identities = 157/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 80575 GGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC--GACTCCA 80632 ||||||||| | | || || || || || | | ||||||||| ||||| | || | Sbjct 13056 GGAGACCCCTCATAGGTTTCATAGGGTCCTTGCTCCTTGGCCAGTTCACAGCTGGCTTCC 12997 Query 80633 TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGG 80691 ||| |||| | ||||||| |||||| | || ||||| | ||| | |||| ||| Sbjct 12996 AAAGCGCCG--TAATAAATGGTCTCAAAAATCTGCTGGTTCA-AGCGCTGTGCCTCGGGG 12940 Query 80692 TCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCG 80751 || || | || | ||| | ||||| |||| ||||||||||| ||||||||| || Sbjct 12939 CTCTCAAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCG 12880 Query 80752 ATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGG 80789 || |||||||| ||| |||| || |||||||||| ||| Sbjct 12879 ATGGGGCGGTGCCGCCTGTTGGAGCGCTCGGCCTGCGG 12842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569929012048880