Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq37467 167 2e-36 seq48655 100 2e-16 seq24048 82.4 6e-11 >seq37467 Length=38624 Score = 167 bits (184), Expect = 2e-36 Identities = 137/167 (82%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 29939 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 29998 || ||||| |||| ||| || |||||||| ||||| || ||||||||||| ||||| ||| Sbjct 3635 TCCAGCCCTGTGATGTGGGCAATCATGTAGGTGAGCAGTGAGTAGCTGGCAATGTTGAAG 3576 Query 29999 GGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCG 30058 || || || || ||||||||||| ||||||||||||||||| || ||||| || || | Sbjct 3575 GGCACTCCCAGTCCCATGTCCCCAGACCTCTGGTAGAGCTGGCAGGAGAGTTCACCCTTC 3516 Query 30059 CTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 |||||| ||||| |||| |||||||||||| || |||||||| || Sbjct 3515 AGCACGTAGAACTGGCACAGGGCGTGGCACGGGGGCAGAGCCATCAG 3469 Score = 156 bits (172), Expect = 3e-33 Identities = 148/184 (80%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||||| |||| |||||||| || |||||||||||||| || ||||| || |||||||| Sbjct 1603 CATGTCCTTGTAGTCTGCTCCAAAGTGCCTCCACTGGAAGCCATACACTGGCCCCAGGTC 1544 Query 30283 TCCCTCTTCCCTGT-GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||||| |||||| ||| ||||||| |||||||| || || | ||| ||||| |||| Sbjct 1543 CCCCTCCTCCCTGGAGCT-GAAGCCCTGCTTGTCCAGGAACTCCCGGGACCCGTTAGCGT 1485 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30401 |||||||||| || || || |||||||||| |||| ||||| || || || || || | Sbjct 1484 CCCAGATCTTCACACCTTTTGCAGAGAGCTCCTTGGCATTTGTAGAGCC-CT-ACAAAAC 1427 Query 30402 ACAG 30405 |||| Sbjct 1426 ACAG 1423 >seq48655 Length=27788 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||||||||||| |||| ||||| |||||| | | ||| | |||||| || || Sbjct 25035 TTGAGCTCCCTGCTGAGTACTATATTTATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 25094 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || ||| |||||||||||| ||||||| || ||| Sbjct 25095 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCGTTCTGTTTACCT 25142 >seq24048 Length=19116 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/143 (77%), Gaps = 10/143 (7%) Strand=Plus/Plus Query 52770 GGCGACAAGTTTGC--GTCGTTCACGGCGCAAAAGGGGACGTGCGGAGCCGTC-CTGACC 52826 || ||||||||||| | ||| ||||| || ||||| | | | ||||| | ||| || Sbjct 17442 GGAGACAAGTTTGCCAGCCGT-CACGGA-CAGAAGGGTA--TCCTGAGCCAGCTCTGGCC 17497 Query 52827 CA-GGAGGACATGCCCTTCGACA-AGGACGGGGTGGTGCCCGACCTCATCATCAACCCCC 52884 |||||||||||||||| ||| || |||| |||| || ||| || || ||||||||| Sbjct 17498 AGTGGAGGACATGCCCTTC-ACAGAGAACGGCATGGTCCCAGACATCCTCTTCAACCCCC 17556 Query 52885 ACGCCTTTCCCTCCAGGATGACC 52907 ||| |||||||||| | |||||| Sbjct 17557 ACGGCTTTCCCTCCCGCATGACC 17579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406045477873908