Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq37467 168 5e-37 seq48655 100 2e-16 seq24048 82.4 6e-11 >seq37467 Length=38624 Score = 168 bits (186), Expect = 5e-37 Identities = 138/168 (82%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 29711 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 29770 || ||||| |||| ||| || |||||||| ||||| || ||||||||||| ||||| ||| Sbjct 3635 TCCAGCCCTGTGATGTGGGCAATCATGTAGGTGAGCAGTGAGTAGCTGGCAATGTTGAAG 3576 Query 29771 GGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCG 29830 ||||| || || ||||||||||| |||||||||||||||||||| ||||| || || | Sbjct 3575 GGCACTCCCAGTCCCATGTCCCCAGACCTCTGGTAGAGCTGGCAGGAGAGTTCACCCTTC 3516 Query 29831 CTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 |||||| ||||| |||| ||| |||||||| || || ||||| ||| Sbjct 3515 AGCACGTAGAACTGGCACAGGGCGTGGCACGGGGGCAGAGCCATCAGA 3468 Score = 125 bits (138), Expect = 6e-24 Identities = 128/162 (79%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT-GCTCGAA 30075 || |||||||||||||| || ||||| || |||||||| ||||| |||||| ||| ||| Sbjct 1581 AAGTGCCTCCACTGGAAGCCATACACTGGCCCCAGGTCCCCCTCCTCCCTGGAGCT-GAA 1523 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 |||| |||||||| || || | ||| ||||| |||||||||||||| || || || | Sbjct 1522 GCCCTGCTTGTCCAGGAACTCCCGGGACCCGTTAGCGTCCCAGATCTTCACACCTTTTGC 1463 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 |||||||| |||| ||||| || || || || || ||||| Sbjct 1462 AGAGAGCTCCTTGGCATTTGTAGAGCC-CT-ACAAAACACAG 1423 >seq48655 Length=27788 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| |||| |||||| | | ||| | |||||| || || Sbjct 25035 TTGAGCTCCCTGCTGAGTACTATATTTATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 25094 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| ||||||| |||||| Sbjct 25095 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCGTTCTGTTTACCT 25142 >seq24048 Length=19116 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/141 (76%), Gaps = 8/141 (6%) Strand=Plus/Plus Query 53534 GGCGACAAGTTTGC-ATCCTTCACGGCGCAAAAGGGGACATGCGGAGC--GGTCCTGACT 53590 || ||||||||||| | || |||||| || ||||| | | | |||| | || | | Sbjct 17442 GGAGACAAGTTTGCCAGCCGTCACGGA-CAGAAGGGTA--TCCTGAGCCAGCTCTGGCCA 17498 Query 53591 CAGGAGGACATGCCCTTCGACA-AGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 53649 |||||||||||||||| ||| || |||| |||| || ||| || || |||||||||| Sbjct 17499 GTGGAGGACATGCCCTTC-ACAGAGAACGGCATGGTCCCAGACATCCTCTTCAACCCCCA 17557 Query 53650 CGCCTTTCCCTCCAGGATGAC 53670 || |||||||||| | ||||| Sbjct 17558 CGGCTTTCCCTCCCGCATGAC 17578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405898373851114