Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq43608 125 6e-24 seq26544 107 2e-18 >seq43608 Length=19049 Score = 125 bits (138), Expect = 6e-24 Identities = 110/136 (81%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619 |||| || |||| | |||||||| || ||||| |||||||| || | ||| |||||||| Sbjct 3266 CAATTCATACCT-CATCTCTGCTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAAT 3208 Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679 ||||| || || |||||||| |||| ||||| || ||||||||||| || ||||| || Sbjct 3207 CCTCTTTTCTTCAGCCAAAAAATAGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACT 3148 Query 4680 GCGGCAAACGCTACTA 4695 || ||||| ||||||| Sbjct 3147 GCTGCAAAAGCTACTA 3132 >seq26544 Length=14703 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || || || | ||| ||||| | || ||||| || Sbjct 8180 TCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 8239 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| |||||||| || || ||||| || Sbjct 8240 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 8299 Query 4692 AC 4693 || Sbjct 8300 AC 8301 Score = 82.4 bits (90), Expect = 7e-11 Identities = 97/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| | |||| || | |||||| ||||| || || |||||||||||||||||||||| | Sbjct 12826 AAAGCCTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAACGCCAGGA 12885 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 | || || || ||||| | ||| || | || || || ||||| || || | || || | Sbjct 12886 CGTGCGAGATGAAGTATTTTTCATCTGCTTTCAGCTTATTCCAATGAGGAAGGTCCTTTG 12945 Query 5041 TTAAATCAAC 5050 |||||||| Sbjct 12946 ACAAATCAAC 12955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426771155520167