Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq51860 123 6e-23 >seq51860 Length=4005 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||| ||||| || ||||||||||| |||| | || | |||||| Sbjct 3212 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 3271 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | ||| |||||||| || Sbjct 3272 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATACCTTCCTTGTCC 3331 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| ||||| || || || Sbjct 3332 TGGATCTTAGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATT 3388 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 3389 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3423 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||| ||||| || ||||||||||| |||| | || | |||||| Sbjct 3440 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 3499 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | ||| |||||||| || Sbjct 3500 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATACCTTCCTTGTCC 3559 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| ||||| || || || Sbjct 3560 TGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATT 3616 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || ||||| |||| |||||| Sbjct 3617 GTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 3651 Score = 113 bits (124), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || ||||||||||| |||| | || | |||||||| | Sbjct 3673 CAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCA 3731 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| ||||||||||| || | | ||| |||||||| || || | Sbjct 3732 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATACCTTCCTTGTCCTGGA 3791 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || || ||| |||| | | |||| ||| ||| ||||| || ||||| || | Sbjct 3792 TCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACTTCCAGGGTAATGGTCT 3848 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || || ||||||||||||| ||||||||| Sbjct 3849 TACCAGTTAGGGTCTTCACGAAGATCTGCATTTT 3882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153029906681829