Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq5532 152 7e-32 seq51733 98.7 1e-15 >seq5532 Length=36385 Score = 152 bits (168), Expect = 7e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| | || || |||||||| ||||| ||| ||| || ||||| || |||||||| Sbjct 3250 ATGAGCCTGGTAGTTTGGAACAGCTGCTCATCATCCCACTCAGGATGCTCCTGTTTCAGG 3191 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || || |||||||| | || || Sbjct 3190 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 3131 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || ||| || || | ||||| Sbjct 3130 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGTACATGAGGAGGG 3071 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || |||| || ||||||||||| || ||||||||| Sbjct 3070 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 3011 Query 9484 TG 9485 || Sbjct 3010 TG 3009 Score = 152 bits (168), Expect = 7e-32 Identities = 223/314 (71%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| |||| || ||||| || || || ||| |||| || ||| | | || Sbjct 5255 GGAAAGCGGTGAAGGGACAGCCTTTCACATTGTGGCAGATGAGCTTCTGTAAGGAGGCAG 5196 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| ||| | || ||||| | || || |||||||| |||||||| ||| | |||| Sbjct 5195 TATTGATGATGTCAAAGCCCACTTTCCCACCAAAGGTGCTAGGCTTCCAATACTCTGGGG 5136 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| | || |||| || ||||| ||||||||||| || || | ||| | ||| Sbjct 5135 AGCAGATGGCATTTCCCATCAGTCCTTTCAGGGAGAACGGCGCTCCAATCTCCACCATGG 5076 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | ||||| ||||| || || || |||||||| || | | || | ||||||||||| Sbjct 5075 TTTCACCAAAGATAGCACCTGGTCGTGGCTTTTCTACGAGAAGACCTGGGTACAGCTCCA 5016 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 5015 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 4956 Query 8588 TTATTAATAAAAAA 8601 ||||| || | ||| Sbjct 4955 TTATTGATGAGAAA 4942 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | || ||||| || || || || || || || | |||| ||| Sbjct 1396 ACCTTTAACACCCATCGGTGTTGGGCAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 1337 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 ||||||||| ||||| |||||||||||||| ||| | ||| || ||||||| | || Sbjct 1336 ATAGGAGAGGTTGGAATAAGCTTCCCAGCTTTTGTAATTGTAATCACTGTTGTATGTTGG 1277 Query 10030 AGGGCTGTCAATCAAATCGGATC 10052 |||||||||||||| | ||||| Sbjct 1276 TGGGCTGTCAATCAAGTGGGATC 1254 >seq51733 Length=8811 Score = 98.7 bits (108), Expect = 1e-15 Identities = 186/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || ||||| | | |||| ||| ||| |||||| || || || || Sbjct 8337 CATCTGGCACATGGAACCCCACATACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCT 8396 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 || | ||| |||| || ||| | || || |||| || || || |||||||||| Sbjct 8397 CAAGCGATGCTGTCTTAACTATCTCAAAGCCAGTTGCTCCACCAAACGTACTGGGCTTCC 8456 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | |||||||||||| ||| | | || || || ||||| || ||||| || | Sbjct 8457 AGTACTCTGGGGAGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCAA 8516 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||||| || || || || | ||||| |||| || || | || || || | Sbjct 8517 TCTCCACCATGCTTTCCCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCTG 8576 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 || | ||||| ||| || | |||||| || || Sbjct 8577 GATAAAACTCCAGAGCATCAATGTCTCCATAGAG 8610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716397397600960