Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20auritus_20[genbank_20GCA_5F002173455.1_202017-06-06] 27,523 sequences; 1,246,050,644 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq44 129 5e-25 seq20 107 2e-18 >seq44 Length=2740361 Score = 129 bits (142), Expect = 5e-25 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || |||||||| || || ||||| ||| || | Sbjct 713065 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCA 713124 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || |||||| |||| || | |||||||||||| || ||||| |||||||| | Sbjct 713125 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 713184 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | ||| || || | || | |||||| || ||||||||||| ||| | || |||| Sbjct 713185 TCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 713244 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || |||||||| |||||||| Sbjct 713245 CGGTCAGGGTCTTTACAAAGATCTGCAT 713272 Score = 123 bits (136), Expect = 2e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||||| || || || |||||||| ||| || ||||| ||| || | Sbjct 712153 CAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCA 712212 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | |||||||||||| || ||||| |||||||| | Sbjct 712213 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 712272 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | ||| || || | || | |||||| || ||||||||||| ||| | || || | Sbjct 712273 TCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTAC 712332 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || ||||| |||||||| Sbjct 712333 CGGTCAGGGTCTTCACAAAGATCTGCAT 712360 Score = 116 bits (128), Expect = 3e-21 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || |||||||| || || ||||| ||| || | Sbjct 712609 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCA 712668 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || |||||| |||| || | |||||||||||| || || || |||||||| | Sbjct 712669 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTGTCCTGGA 712728 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||| || | || | |||||| || ||| ||||||| ||| | ||||||| Sbjct 712729 TCTTCGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTTTTGC 712788 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | ||||| || || ||||| ||||||||| Sbjct 712789 CAGTCAGGGTCTTCACAAAGATCTGCATG 712817 Score = 116 bits (128), Expect = 3e-21 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || |||||||| ||| || ||||| ||| || | Sbjct 712837 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCA 712896 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || |||||| |||| || | |||||||||||| || ||||| |||||||| | Sbjct 712897 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 712956 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | ||| || || | || | |||||| || ||||||||| | ||| | || |||| Sbjct 712957 TCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGC 713016 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| || || || || ||||||||| Sbjct 713017 CGGTCAAGGTCTTCACGAAGATCTGCATG 713045 Score = 104 bits (114), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || ||||||||||| | || || ||| || | Sbjct 712381 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCATCTTCCA 712440 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || |||||| |||| || | ||||||||| || || ||||| |||||||| | Sbjct 712441 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 712500 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | ||| || || | || | |||||| || ||||||||| | ||| | || |||| Sbjct 712501 TCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGC 712560 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| || || || || ||||||||| Sbjct 712561 CGGTCAAGGTCTTCACGAAGATCTGCATG 712589 >seq20 Length=4226088 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || ||||| ||||| |||||||| ||| | |||||| || Sbjct 1306953 CAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGCCCGTC 1306894 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| | | ||||||||| || || |||||||||||||| Sbjct 1306893 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTGTC 1306834 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| || ||| ||||| | ||| | || Sbjct 1306833 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 1306774 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| ||||||||| Sbjct 1306773 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 1306740 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || ||||| || || |||||||| ||| | |||||| || Sbjct 1306497 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGCCCGTC 1306438 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| | | ||||||||| || || |||||||||||||| Sbjct 1306437 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTGTC 1306378 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| || ||| ||||| | ||| | || Sbjct 1306377 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 1306318 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| ||||||||| Sbjct 1306317 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 1306284 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || ||||| || || |||||||| ||| | |||||| || Sbjct 1306725 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGCCCGTC 1306666 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| | | ||||||||| || || |||||||||||||| Sbjct 1306665 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTGTC 1306606 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| || ||| ||||| | ||| | || Sbjct 1306605 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 1306546 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| ||||||||| Sbjct 1306545 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 1306512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433684877421916