Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20auritus_20[genbank_20GCA_5F002173455.1_202017-06-06] 27,523 sequences; 1,246,050,644 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq707 381 4e-101 seq68 98.7 7e-16 >seq707 Length=2308111 Score = 381 bits (422), Expect = 4e-101 Identities = 685/998 (69%), Gaps = 6/998 (1%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTC 107687 ||||| ||||| || | ||||| | ||||||||| || ||||||| ||||| Sbjct 255780 TACCTGAACATGACGAAGGACTGCAGGAGCTTCAAGGAGACGCGGCAGTTCATCGAGTTC 255839 Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 |||||||| | || ||| ||| ||||||||||||||||| ||||| |||| | || Sbjct 255840 CCACTGAGCCAGGAGGAGGCAGAGTTCCCCATTGCCTACTCCATGGTCATCCACAACAAC 255899 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || || | || || ||||| ||| | || | || |||| |||||| | ||||| || Sbjct 255900 ATCGAGATGTTCGAGCGGCTCCTGAGGTCCCTCTACACCCCCCAGAACGTCTACTGCATC 255959 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 ||||| || ||||||||| | | ||| | ||||| || |||||| | ||||| Sbjct 255960 CACGTTGACAGGAAGTCCCCGGCTATCTTCCAGGAGGCCGTGCGGGCCATCGTAGCCTGC 256019 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||||||||| |||| |||| || ||| |||||| ||||||||||||||| | Sbjct 256020 TTCCCCAATATCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGG 256079 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTAC 107987 |||| || ||||| ||||| ||| | ||| || | |||||| | |||||||| | || Sbjct 256080 CTGCAGGCAGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATGCCATGGCACTAT 256139 Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047 | || || || ||||| || || |||||||| |||||||| || ||||| ||| ||| Sbjct 256140 CTCCTCAACACCTGCGGCACCGATTTCCCCATCAAGACCAACGCTGAGATAGTCAGCGCC 256199 Query 108048 CTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaa 108107 || ||| | || ||| |||||| |||||||| ||| || || || ||||| Sbjct 256200 CTGAAGGCGCTGCGGGGCCGGAACAGCATGGAGTCAGAGAAGCCCTCGGACTCCAAGCGG 256259 Query 108108 aaTCGCTGGAAATACCGC--TATGAGGTGACAGACACACTGTACCCTACCAGCAAGA-TG 108164 |||||| | || | | || | | ||| || ||| |||| | | | Sbjct 256260 GCACGCTGGCAGTATCACCACATAGTGGGGCAGTTCATCT---CCCGGACAGCCACAGAG 256316 Query 108165 AAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCT 108224 || || || || | || | ||||||||||| || ||||| || | | | | | Sbjct 256317 AAACTGCCGCCACCCCACAACTCCCCCATGTTCACGGGCAATGCGTACATCGCAGTCACA 256376 Query 108225 CGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTC 108284 || ||||| || || | |||| || ||||| | | | | | |||| |||| | Sbjct 256377 CGGGCCTTCGTGCAGTACATCTTTGAGAACCCCACAACACTGCAGTTCTTTGAGTGGGCC 256436 Query 108285 AAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATG 108344 || |||||||| ||||| ||||| ||| ||||||||||||| | || || | || Sbjct 256437 AAGGACACCTACAGCCCTGACGAGCACATCTGGGCCACCCTCAACCGCATGCCTGGCGTG 256496 Query 108345 CCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGG 108404 || ||||| | || | ||||| || |||| || |||| ||| | || | Sbjct 256497 CCAGGCTCCCTGCCCCAGAATGACAAGTTCCAGCTCTCGGATATGAACGCCCTACCCCGC 256556 Query 108405 CTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGC 108464 || |||||||||||||||| ||||| || ||||| ||| ||||| || | |||||| Sbjct 256557 CTGGTCAAGTGGCAGTACCTGGAGGGCGACCCCAGCAAGGGCGCGCCCTACCCGCCCTGC 256616 Query 108465 TCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTC 108524 | || || | | | || ||||||| ||||||| || ||| || |||||| ||| Sbjct 256617 ACCGGCCAGCACCAGCGCTCCGTCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGCTC 256676 Query 108525 CAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAG 108584 ||| | || ||||||||||| |||||||| ||||| |||||| || || | | | | Sbjct 256677 CAGCAGCACCACCTCTTGGCCAACAAGTTCGACCCCGTGGTGGACGACGCCGCCATCCTG 256736 Query 108585 TGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 ||| | || |||||||| || || | |||| |||| || Sbjct 256737 TGCCTGGAGGAGTACCTGCGCCACAGGGCCCTCTACGG 256774 >seq68 Length=3481568 Score = 98.7 bits (108), Expect = 7e-16 Identities = 197/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| ||||| || || ||||| || ||| || | ||||| || ||||| | Sbjct 2574254 TTGAGTGGGCAAAAGATACTTACAGCCCAGATGAATACTTATGGGCAACAATTCAGAGAA 2574313 Query 108334 CTCCGTGGA-TGCCTGGCTCTGT---TCCTAGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | | || || | || | |||| || |||||| | | || |||||| Sbjct 2574314 -TCCCTGAAGTCCCAGGTGCAGTGTCTTCTAGTGAC---AAGTATGATGTTTCTGACATG 2574369 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | |||||| | ||||||||||||||| || || || || || ||| || Sbjct 2574370 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTGTCCAAGGGTGCA 2574429 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 ||||| |||| ||| ||| | ||| | | |||| ||| |||| || ||| Sbjct 2574430 CCTTACCCACCATGCAGTGGGGTTCATGTTCGCTCTGTCTGTGTTTTTGGGGTAGGAGAC 2574489 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 2574490 CTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 2574537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348151977910902