Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20auritus_20[genbank_20GCA_5F002173455.1_202017-06-06] 27,523 sequences; 1,246,050,644 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq120 120 4e-22 seq1695 116 5e-21 seq490 114 2e-20 seq1171 96.9 5e-15 >seq120 Length=4789148 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 1818813 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 1818872 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 1818873 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 1818932 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 1818933 CAACCACTCTCTCACC 1818948 >seq1695 Length=479179 Score = 116 bits (128), Expect = 5e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || |||||| | | | ||| || | ||||||||||||||| ||| Sbjct 42709 TATTTTTTATTAAATGCTTCCAGTAAACGCAGCAGGTGTACGAACAGATTGATGATGTCC 42650 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || | || || || || | Sbjct 42649 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGATAATTTGTGCATCAGCAAA 42590 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 | |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| | Sbjct 42589 TAGGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAAC 42530 Query 9408 TCCACTGTTTCACT 9421 || | ||||||||| Sbjct 42529 TCTATTGTTTCACT 42516 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 9457 AAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTA 9516 ||||| ||| | |||| | |||||||||| ||| ||||| |||||||| || || | Sbjct 41433 AAATCATCAATATGACAACATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTCGACTGCA 41374 Query 9517 GAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGA 9576 |||||||||||||| ||||||| || |||||||| || || || ||||||| |||| Sbjct 41373 AGGTATATGCAGTCAGTCCAAGAAATACAGCAGTAGTAAGAATAAAGGCTTGCAAGACGA 41314 Query 9577 CATGCACATCATAGAAA 9593 | ||||||||||||| Sbjct 41313 TAGACACATCATAGAAA 41297 >seq490 Length=1639929 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 130494 CCTCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 130553 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 130554 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 130613 Query 36300 C 36300 | Sbjct 130614 C 130614 >seq1171 Length=398088 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||| || || |||||| || | || ||||| || ||||| | Sbjct 362218 TCCACCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 362277 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || || ||||||||||| || || |||||||| ||||| || | ||| || | Sbjct 362278 TGAGAGACTGGCTCTGATCGATGAAAGCGCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 362337 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | || ||||| | || ||||| | | |||| | || || |||| Sbjct 362338 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 362388 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| ||||| ||||| || | ||||| || ||||| || ||||||||||| || || | Sbjct 364520 TACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTATAGGGCTCGAT 364579 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 || || ||||| ||||| || |||||||| || ||||| ||||| || | | | | Sbjct 364580 GGATTCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAG 364639 Query 65300 ACTATTTCTAAGACCGTAT 65318 || ||||| | ||||||| Sbjct 364640 GCTGTTTCTGACACCGTAT 364658 Score = 89.7 bits (98), Expect = 7e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 ||||||| ||||| ||||||| || || || |||||||| || || || || ||||||| Sbjct 366016 CATATGTTTCGTACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGT 366075 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||| || || || || | || || | || || || |||| ||||| || | Sbjct 366076 AATAAATAGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCGGGGCTTTCAAAGGGGT 366135 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | | || || |||||||| | || || |||||||| || || || | ||| | Sbjct 366136 ACCTCATCAAGATGAAAGCGTCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGC 366195 Query 65599 TCTTATTAGAGATTTCAGC 65617 | || ||| |||||| Sbjct 366196 GTCTGTTGGAGCGTTCAGC 366214 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||| ||||||||||| || || | || | ||||||| || || Sbjct 370247 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 370306 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || ||||| || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 370307 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 370365 Query 66179 TTCCAAGTATATGGC 66193 |||| ||| ||||| Sbjct 370366 CTCCAGGTAGATGGC 370380 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 ||||||||| ||| || ||||||||||| | ||| || || || || || || || | || Sbjct 376150 CACTAAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTTGCTGCCAGAA 376209 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | || || || || |||| || || || || || |||| || ||||| || |||| Sbjct 376210 TAGCGTAGTCGGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAGCGTATCCA 376269 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| ||||| || || ||| | || | || || || || ||||| Sbjct 376270 GTTCCACCGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCAT 376315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657946363875320