Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20auritus_20[genbank_20GCA_5F002173455.1_202017-06-06] 27,523 sequences; 1,246,050,644 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq44 100 3e-16 seq1171 93.3 4e-14 >seq44 Length=2740361 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || ||||| || || |||||||| ||| || |||| Sbjct 712830 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 712889 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || ||||| ||||||| | ||||||||||| || |||||||| ||| Sbjct 712890 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 712949 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || ||| || | | || | ||||| |||| || || |||| || | Sbjct 712950 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 713009 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||||||||| || || ||||| || ||||| Sbjct 713010 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 713044 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | |||||||| || || |||||||| ||| || |||| Sbjct 712146 CGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 712205 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || |||||| ||||||| | ||||||||||| || |||||||| ||| Sbjct 712206 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 712265 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || ||| || | | || | ||||| |||| || || || | || | Sbjct 712266 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 712325 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| ||||||| || || || || || |||||| Sbjct 712326 GTCTTACCGGTCAGGGTCTTCACAAAGATCTGCATA 712361 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || ||||| || || ||||||||||| | | | | ||| Sbjct 712374 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATC--TGAGAGGGTACGAC 712431 Query 143030 --TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 143087 ||||| || || || ||||| ||||||| | |||||||| || || |||||||| | Sbjct 712432 CATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCT 712491 Query 143088 TGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCA 143147 |||| || ||| || | | || | ||||| |||| || || |||| || | Sbjct 712492 TGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGA 712551 Query 143148 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||||||||| || || ||||| || ||||| Sbjct 712552 TGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 712588 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || ||||| || || |||||||| || || |||| Sbjct 713058 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 713117 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || ||||| ||||||| | ||||||||||| || |||||||| ||| Sbjct 713118 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 713177 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || ||| || | | || | ||||| |||| || || || | || | Sbjct 713178 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 713237 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||||| || ||||| || || ||||| Sbjct 713238 GTCTTGCCGGTCAGGGTCTTTACAAAGATCTGCAT 713272 >seq1171 Length=398088 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 157106 ACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT-TTGATTGCTTTT 157164 |||||||| | ||||| |||||||||||| || ||| ||| | || |||||||| || Sbjct 368922 ACTATTTCTGTACACAGATTGCTGCATTTGAT-GGTCCCCAAGTTCTGCTGATTGCTCTT 368980 Query 157165 GCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTAT 157224 |||||||||| ||| ||||| | ||||||||| |||||||| || | ||| || || Sbjct 368981 CCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCTGTCTGAGACTCGAT 369040 Query 157225 GAT 157227 ||| Sbjct 369041 GAT 369043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506839968033360